Factsheet for Bra035898.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16780	Canola	cytosol	99.18	99.18
AT5G62280.1	Thale cress	cytosol	85.66	88.56
Bra010072.1-P	Field mustard	cytosol	86.48	86.83
Bra029269.1-P	Field mustard	cytosol	85.25	84.9
VIT_16s0022g01630.t01	Wine grape	cytosol, plastid	53.69	59.82
KRG92460	Soybean	cytosol, plastid	50.41	55.16
KRH34338	Soybean	cytosol, plastid	50.0	54.46
KRH38734	Soybean	cytosol, plastid	48.77	53.6
PGSC0003DMT400059241	Potato	cytosol, plastid	45.9	51.85
Solyc03g083500.2.1	Tomato	cytosol	45.49	51.39
KRH09236	Soybean	cytosol	37.7	50.83
GSMUA_Achr5P18780_001	Banana	cytosol	40.16	46.01
Bra040314.1-P	Field mustard	cytosol	26.64	29.15
Bra004904.1-P	Field mustard	cytosol	25.82	28.51
Bra007560.1-P	Field mustard	cytosol	23.77	26.73
Bra007557.1-P	Field mustard	plastid	23.36	26.03
Bra026975.1-P	Field mustard	cytosol	22.95	25.69
Bra019758.1-P	Field mustard	cytosol	22.95	25.45
Bra016780.1-P	Field mustard	cytosol	22.13	24.77
Bra034527.1-P	Field mustard	cytosol	20.9	22.77

Protein Annotations

EnsemblPlants:Bra035898.1	EnsemblPlants:Bra035898.1-P	EnsemblPlantsGene:Bra035898	Gene3D:3.40.50.150	InterPro:DUF1442	PANTHER:PTHR33593
PANTHER:PTHR33593:SF3	PFAM:PF07279	SEG:seg	UniParc:UPI0002542095	UniProt:M4F498	MapMan:35.2

Description

AT5G62280 (E=2e-102) | unknown protein

Coordinates

chrA09:+:3014887..3015768

Molecular Weight (calculated)

27012.0 Da

IEP (calculated)

7.455

GRAVY (calculated)

-0.325

Length

244 amino acids

Sequence
(BLAST)

001: MAFWSAENAT KAYLSTLKTD QRSKEPNVAE FISALAAGNN ARKIAVACAG AANTDILVAL IAAANQTRGQ VVCVLRGIEE LIISKKMLEP SEIHHIHFVV
101: GESSDNNLIN DHFGEADFVL VDCNLENHQD IVTKIVNHHE ENARSDGGSG VAVVVGYNAF SRGSWRFSDG RKTQFLPIGG GLLVTRVNDN GNYNQQMMMN
201: KNNHHHRHHD RVRKSHWVVK VDKCTGEEHV FRVRVPRGEA IIEA

Best Arabidopsis Sequence Match ( AT5G62280.1 )
(BLAST)

001: MAFWSAENAT KAYLSTLKTD QRTKEPNVAE FISALAAGNS ARKIAVACAG AANADILVAL IAAANQTRGQ VVCVLRGIEE LIISQKMLEP SEIHQIQFVV
101: GESNDDTLIN NHFGEADFVL VDCNLENHQE IVGKILNHHE ENARTGGGSG VAVVVGYNAF SRGSWRFSDG RKTQFLPIGE GLLVTRVNDN QKMMMKNHHR
201: DQVMRKSRWV VKVDKCTGEE HVFRVRVPRG EAIIEA

Arabidopsis Description

At5g62280 [Source:UniProtKB/TrEMBL;Acc:Q9LVA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.