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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY00273 Canola cytosol 100.0 100.0
CDX86908 Canola extracellular 93.0 89.68
AT5G62280.1 Thale cress cytosol 85.6 88.14
Bra035898.1-P Field mustard cytosol 86.83 86.48
Bra029269.1-P Field mustard cytosol 86.01 85.31
VIT_16s0022g01630.t01 Wine grape cytosol, plastid 52.67 58.45
KRG92460 Soybean cytosol, plastid 50.62 55.16
KRH34338 Soybean cytosol, plastid 50.21 54.46
KRH38734 Soybean cytosol, plastid 48.97 53.6
KRH09236 Soybean cytosol 38.68 51.93
Solyc03g083500.2.1 Tomato cytosol 44.86 50.46
PGSC0003DMT400059241 Potato cytosol, plastid 44.44 50.0
GSMUA_Achr5P18780_001 Banana cytosol 39.51 45.07
Bra040314.1-P Field mustard cytosol 26.75 29.15
Bra004904.1-P Field mustard cytosol 25.93 28.51
Bra007560.1-P Field mustard cytosol 25.1 28.11
Bra007557.1-P Field mustard plastid 24.28 26.94
Bra026975.1-P Field mustard cytosol 23.87 26.61
Bra019758.1-P Field mustard cytosol 23.46 25.91
Bra016780.1-P Field mustard cytosol 23.05 25.69
Bra034527.1-P Field mustard cytosol 22.22 24.11
Protein Annotations
EnsemblPlants:Bra010072.1EnsemblPlants:Bra010072.1-PEnsemblPlantsGene:Bra010072Gene3D:3.40.50.150InterPro:DUF1442PANTHER:PTHR33593
PANTHER:PTHR33593:SF3PFAM:PF07279SEG:segUniParc:UPI000253F67EUniProt:M4D0S3MapMan:35.2
Description
AT5G62280 (E=3e-105) | unknown protein
Coordinates
chrA06:+:19173389..19174286
Molecular Weight (calculated)
26535.6 Da
IEP (calculated)
8.945
GRAVY (calculated)
-0.316
Length
243 amino acids
Sequence
(BLAST)
001: MAFWSAENAT KAYLTTLKQD QRTKEPNVAE FISALAAGNN ARKIVVACAG AANADIVVAL IAAANQTRGQ VVCVLRGIEE LIISKKMLEP SEIHQIQFVV
101: GESNDNTLIN GHFGEADFVL VDCNLKNHQD IVRKIVNNHE ENARTGGGSG VAVVVGYNAF SRGSSRFGDG RKTQFLPIGE GLLVTRVNDN GSYNQKTMKK
201: NNGHHHHHDH VRKSNWVMKV DKCTGEEHVF RVRAPRGEAI IGA
Best Arabidopsis Sequence Match ( AT5G62280.1 )
(BLAST)
001: MAFWSAENAT KAYLSTLKTD QRTKEPNVAE FISALAAGNS ARKIAVACAG AANADILVAL IAAANQTRGQ VVCVLRGIEE LIISQKMLEP SEIHQIQFVV
101: GESNDDTLIN NHFGEADFVL VDCNLENHQE IVGKILNHHE ENARTGGGSG VAVVVGYNAF SRGSWRFSDG RKTQFLPIGE GLLVTRVNDN QKMMMKNHHR
201: DQVMRKSRWV VKVDKCTGEE HVFRVRVPRG EAIIEA
Arabidopsis Description
At5g62280 [Source:UniProtKB/TrEMBL;Acc:Q9LVA8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.