Factsheet for PGSC0003DMT400059241

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g083500.2.1	Tomato	cytosol	95.83	95.83
VIT_16s0022g01630.t01	Wine grape	cytosol, plastid	61.11	60.27
PGSC0003DMT400072045	Potato	extracellular	54.63	55.4
KRG92460	Soybean	cytosol, plastid	55.56	53.81
KRH34338	Soybean	cytosol, plastid	54.63	52.68
KRH38734	Soybean	cytosol, plastid	53.7	52.25
PGSC0003DMT400059243	Potato	cytosol	51.39	51.87
KRH09236	Soybean	cytosol	43.06	51.38
GSMUA_Achr5P18780_001	Banana	cytosol	47.22	47.89
AT5G62280.1	Thale cress	cytosol	50.46	46.19
Bra035898.1-P	Field mustard	cytosol	51.85	45.9
CDY69766	Canola	cytosol	51.39	45.68
CDY16780	Canola	cytosol	51.39	45.49
CDY69982	Canola	cytosol	50.93	45.08
Bra029269.1-P	Field mustard	cytosol	50.93	44.9
CDX87243	Canola	cytosol	50.46	44.67
CDY00273	Canola	cytosol	50.0	44.44
Bra010072.1-P	Field mustard	cytosol	50.0	44.44
CDX86908	Canola	extracellular	46.76	40.08
PGSC0003DMT400066768	Potato	extracellular	33.33	39.13
PGSC0003DMT400032504	Potato	cytosol	29.63	29.36
PGSC0003DMT400010101	Potato	cytosol	26.85	26.48
PGSC0003DMT400000636	Potato	cytosol	30.09	25.79
PGSC0003DMT400024806	Potato	cytosol	20.83	23.81

Protein Annotations

EnsemblPlants:PGSC0003DMT400059241	EnsemblPlantsGene:PGSC0003DMG400023015	EntrezGene:102581176	Gene3D:3.40.50.150	InterPro:DUF1442	PANTHER:PTHR33593
PANTHER:PTHR33593:SF3	PFAM:PF07279	PGSC:PGSC0003DMG400023015	RefSeq:XP_006365243.1	SEG:seg	UniParc:UPI00029685D0
UniProt:M1C407	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400023015]

Coordinates

chr3:-:40359038..40360252

Molecular Weight (calculated)

23910.0 Da

IEP (calculated)

9.295

GRAVY (calculated)

-0.184

Length

216 amino acids

Sequence
(BLAST)

001: MSCWSAENAT KAFLKTMNMG KRANEPNGAE FISALAAGNN AQIMVVACAN VADSTTLALV AAAQQTRGRV ICILRGIEEL HLSKMALGTN SSHLEFVVAK
101: SQTLQMLLPN YYKDADFIAV DCNIQNHEEI LGSLRKSRRD KSTIVLGYNA FCKESWKSSP LRTQLLPIGE GLLLTRIAAK MKVDTDRGHW IVKVDKCTGE
201: EHVYRVKSPR RREVEA

Best Arabidopsis Sequence Match ( AT5G62280.1 )
(BLAST)

001: MAFWSAENAT KAYLSTLKTD QRTKEPNVAE FISALAAGNS ARKIAVACAG AANADILVAL IAAANQTRGQ VVCVLRGIEE LIISQKMLEP SEIHQIQFVV
101: GESNDDTLIN NHFGEADFVL VDCNLENHQE IVGKILNHHE ENARTGGGSG VAVVVGYNAF SRGSWRFSDG RKTQFLPIGE GLLVTRVNDN QKMMMKNHHR
201: DQVMRKSRWV VKVDKCTGEE HVFRVRVPRG EAIIEA

Arabidopsis Description

At5g62280 [Source:UniProtKB/TrEMBL;Acc:Q9LVA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.