CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00273	Canola	cytosol	96.71	96.71
CDY69982	Canola	cytosol	90.95	90.57
CDX86908	Canola	extracellular	92.59	89.29
AT5G62280.1	Thale cress	cytosol	86.42	88.98
CDX87243	Canola	cytosol	88.07	87.7
CDY16780	Canola	cytosol	86.83	86.48
VIT_16s0022g01630.t01	Wine grape	cytosol, plastid	53.5	59.36
KRG92460	Soybean	cytosol, plastid	50.21	54.71
KRH38734	Soybean	cytosol, plastid	49.38	54.05
KRH34338	Soybean	cytosol, plastid	49.79	54.02
KRH09236	Soybean	cytosol	39.09	52.49
Solyc03g083500.2.1	Tomato	cytosol	46.09	51.85
PGSC0003DMT400059241	Potato	cytosol, plastid	45.68	51.39
GSMUA_Achr5P18780_001	Banana	cytosol	39.51	45.07
CDY37036	Canola	cytosol	27.16	29.6
CDX74734	Canola	cytosol	26.34	28.96
CDY57106	Canola	cytosol	26.34	28.7
CDY52349	Canola	cytosol	25.1	28.11
CDX71783	Canola	cytosol	25.1	27.98
CDY51807	Canola	cytosol	13.99	27.87
CDY41141	Canola	cytosol	25.1	27.85
CDY26557	Canola	cytosol	24.28	27.06
CDX98072	Canola	cytosol	24.28	26.82
CDY21045	Canola	cytosol	23.87	26.61
CDY15992	Canola	cytosol	23.87	26.61
CDY31260	Canola	cytosol	23.46	26.15
CDY34691	Canola	cytosol	22.63	24.55
CDY59673	Canola	cytosol	22.63	24.55
CDY30071	Canola	cytosol	20.16	23.79
CDY25700	Canola	cytosol	21.4	23.32

Protein Annotations

EnsemblPlants:CDY69766	EnsemblPlantsGene:GSBRNA2T00092159001	Gene3D:3.40.50.150	InterPro:DUF1442	PANTHER:PTHR33593	PANTHER:PTHR33593:SF3
PFAM:PF07279	ProteinID:CDY69766	ProteinID:CDY69766.1	SEG:seg	UniParc:UPI0004EE642F	UniProt:A0A078JWA6
MapMan:35.2	:	:	:	:	:

Description

BnaCnng65240DBnaCnng65240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JWA6]

Coordinates

chrLK040261:-:643..1766

Molecular Weight (calculated)

26832.8 Da

IEP (calculated)

8.350

GRAVY (calculated)

-0.316

Length

243 amino acids

Sequence
(BLAST)

001: MAFWSAENAT KAYLTTLKHD QRTKEPNVAE FISALAAGNN ARKIVVACAG AANADIVVAL IAAANQTRGQ VVCVLRGIEE LIISKKMLEP SEIHQIQFVV
101: GESNDNTLIN DHFGEADFVL VDCNLKNHQD IVRKIVNNHE ENARTGGGSG VAVVVGYNAF SRGSWRFSDW RKTQFLPIGE GLLVTRVNDN GSYNQKTMKK
201: NNGYHHHHDD VRKSNWVVKV DKCTGEEHVF RVRAPRGEAI IGA

Best Arabidopsis Sequence Match ( AT5G62280.1 )
(BLAST)

001: MAFWSAENAT KAYLSTLKTD QRTKEPNVAE FISALAAGNS ARKIAVACAG AANADILVAL IAAANQTRGQ VVCVLRGIEE LIISQKMLEP SEIHQIQFVV
101: GESNDDTLIN NHFGEADFVL VDCNLENHQE IVGKILNHHE ENARTGGGSG VAVVVGYNAF SRGSWRFSDG RKTQFLPIGE GLLVTRVNDN QKMMMKNHHR
201: DQVMRKSRWV VKVDKCTGEE HVFRVRVPRG EAIIEA

Arabidopsis Description

At5g62280 [Source:UniProtKB/TrEMBL;Acc:Q9LVA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.