CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59673	Canola	cytosol	89.24	88.84
CDY34691	Canola	cytosol	88.34	87.95
AT1G62840.1	Thale cress	cytosol	79.37	79.02
CDY15992	Canola	cytosol	63.68	65.14
CDY26557	Canola	cytosol	63.23	64.68
CDY21045	Canola	cytosol	62.33	63.76
CDY31260	Canola	cytosol	60.54	61.93
CDX98072	Canola	cytosol	59.64	60.45
CDY30071	Canola	cytosol	53.81	58.25
PGSC0003DMT400010101	Potato	cytosol	43.95	44.75
Solyc08g079480.2.1	Tomato	cytosol	43.5	44.29
Solyc08g007480.1.1	Tomato	cytosol	43.05	44.04
PGSC0003DMT400032504	Potato	cytosol	42.15	43.12
CDX74734	Canola	cytosol	42.15	42.53
CDY41141	Canola	cytosol	41.7	42.47
CDY52349	Canola	cytosol	41.26	42.4
CDX71783	Canola	cytosol	41.26	42.2
CDY37036	Canola	cytosol	42.15	42.15
CDY57106	Canola	cytosol	41.7	41.7
CDY51807	Canola	cytosol	20.63	37.7
GSMUA_Achr8P19380_001	Banana	cytosol	35.43	36.41
GSMUA_Achr5P18770_001	Banana	cytosol	33.63	34.56
TraesCS5A01G324500.1	Wheat	cytosol	29.6	33.33
TraesCS5B01G325300.1	Wheat	cytosol	30.04	33.17
GSMUA_AchrUn_...	Banana	cytosol	31.84	32.57
TraesCS5B01G325100.1	Wheat	cytosol	29.6	32.35
TraesCS5D01G331200.1	Wheat	cytosol	29.6	32.35
HORVU5Hr1G082620.1	Barley	cytosol	29.6	32.35
Zm00001d018712_P001	Maize	cytosol	33.63	32.33
TraesCS5D01G331400.1	Wheat	cytosol, plastid	29.15	32.18
TraesCS5A01G324300.1	Wheat	cytosol	29.15	31.86
EER97893	Sorghum	cytosol	32.74	29.55
Os02t0455400-00	Rice	endoplasmic reticulum, plasma membrane	33.63	27.99
GSMUA_Achr11P...	Banana	cytosol	23.32	22.32
CDY69766	Canola	cytosol	23.32	21.4
CDY00273	Canola	cytosol	22.87	20.99
CDY69982	Canola	cytosol	22.42	20.49
CDX87243	Canola	cytosol	21.97	20.08
CDY16780	Canola	cytosol	21.52	19.67
CDX86908	Canola	extracellular	20.18	17.86

Protein Annotations

EnsemblPlants:CDY25700	EnsemblPlantsGene:GSBRNA2T00033048001	InterPro:DUF1442	PANTHER:PTHR33593	PANTHER:PTHR33593:SF2	PFAM:PF07279
ProteinID:CDY25700	ProteinID:CDY25700.1	UniParc:UPI0004EF2D04	UniProt:A0A078GGW7	MapMan:35.2	:

Description

BnaC03g69750DBnaC03g69750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGW7]

Coordinates

chrLK032179:-:175963..176670

Molecular Weight (calculated)

24648.3 Da

IEP (calculated)

8.633

GRAVY (calculated)

-0.266

Length

223 amino acids

Sequence
(BLAST)

001: MKLIWSPETA SKAYIDTVKS FPKYLIGRGE MVAARAAGWN ATLIVETWSE GETIAISVGL NVASQHTNAR HMCIVPNAIS EAAYLQAMTQ QSCSTLPETI
101: IMNEEEEGNS ESTMQKLQGI DFLVIDWDQK DFAANVLRNA AFGSRGAVVV CRSGYRRSTS CFSWTKAFSD RNVVRTVTLP VSGGLEIAHV AAPRISGKSD
201: NNNKRKWIKH IDQRSGEEHV IRK

Best Arabidopsis Sequence Match ( AT1G62840.1 )
(BLAST)

001: MKLIWSPETA SKAYIDTVKS CENLGTPGAA ELVAAMAAGW NANLIVETWS EGETIAISVG LNIASRHTNG RHICIVPNAR SQTAYLQAMA EQSCSNLPET
101: IIMNEEGEEL EHTMQTLQGI DFLVVDWDQK DFAANVLRNA VFGSRGAVVV CRSGYRRSTS CFSWTKAFSD RNVVRTVTLP VSGGLEIAHV AAARSSGKSD
201: NNSNKRKWIK HFDQRSGEEH VIRK

Arabidopsis Description

Ankyrin repeat/KH domain protein (DUF1442) [Source:UniProtKB/TrEMBL;Acc:Q9SI67]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.