CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010072.1-P	Field mustard	cytosol	100.0	100.0
CDY69766	Canola	cytosol	96.71	96.71
CDY69982	Canola	cytosol	90.12	89.75
CDX86908	Canola	extracellular	93.0	89.68
AT5G62280.1	Thale cress	cytosol	85.6	88.14
CDX87243	Canola	cytosol	87.24	86.89
CDY16780	Canola	cytosol	86.01	85.66
VIT_16s0022g01630.t01	Wine grape	cytosol, plastid	52.67	58.45
KRG92460	Soybean	cytosol, plastid	50.62	55.16
KRH34338	Soybean	cytosol, plastid	50.21	54.46
KRH38734	Soybean	cytosol, plastid	48.97	53.6
KRH09236	Soybean	cytosol	38.68	51.93
Solyc03g083500.2.1	Tomato	cytosol	44.86	50.46
PGSC0003DMT400059241	Potato	cytosol, plastid	44.44	50.0
GSMUA_Achr5P18780_001	Banana	cytosol	39.51	45.07
CDY37036	Canola	cytosol	26.75	29.15
CDX74734	Canola	cytosol	25.93	28.51
CDY57106	Canola	cytosol	25.93	28.25
CDY52349	Canola	cytosol	24.69	27.65
CDX71783	Canola	cytosol	24.69	27.52
CDY41141	Canola	cytosol	24.69	27.4
CDY51807	Canola	cytosol	13.58	27.05
CDY26557	Canola	cytosol	23.87	26.61
CDY31260	Canola	cytosol	23.46	26.15
CDY21045	Canola	cytosol	23.46	26.15
CDY15992	Canola	cytosol	23.46	26.15
CDX98072	Canola	cytosol	23.46	25.91
CDY59673	Canola	cytosol	22.22	24.11
CDY34691	Canola	cytosol	22.22	24.11
CDY30071	Canola	cytosol	19.75	23.3
CDY25700	Canola	cytosol	20.99	22.87

Protein Annotations

EnsemblPlants:CDY00273	EnsemblPlantsGene:GSBRNA2T00109839001	Gene3D:3.40.50.150	InterPro:DUF1442	PANTHER:PTHR33593	PANTHER:PTHR33593:SF3
PFAM:PF07279	ProteinID:CDY00273	ProteinID:CDY00273.1	SEG:seg	UniParc:UPI000253F67E	MapMan:35.2

Description

BnaA06g21740D

Coordinates

chrLK031917:+:662993..664097

Molecular Weight (calculated)

26535.6 Da

IEP (calculated)

8.945

GRAVY (calculated)

-0.316

Length

243 amino acids

Sequence
(BLAST)

001: MAFWSAENAT KAYLTTLKQD QRTKEPNVAE FISALAAGNN ARKIVVACAG AANADIVVAL IAAANQTRGQ VVCVLRGIEE LIISKKMLEP SEIHQIQFVV
101: GESNDNTLIN GHFGEADFVL VDCNLKNHQD IVRKIVNNHE ENARTGGGSG VAVVVGYNAF SRGSSRFGDG RKTQFLPIGE GLLVTRVNDN GSYNQKTMKK
201: NNGHHHHHDH VRKSNWVMKV DKCTGEEHVF RVRAPRGEAI IGA

Best Arabidopsis Sequence Match ( AT5G62280.1 )
(BLAST)

001: MAFWSAENAT KAYLSTLKTD QRTKEPNVAE FISALAAGNS ARKIAVACAG AANADILVAL IAAANQTRGQ VVCVLRGIEE LIISQKMLEP SEIHQIQFVV
101: GESNDDTLIN NHFGEADFVL VDCNLENHQE IVGKILNHHE ENARTGGGSG VAVVVGYNAF SRGSWRFSDG RKTQFLPIGE GLLVTRVNDN QKMMMKNHHR
201: DQVMRKSRWV VKVDKCTGEE HVFRVRVPRG EAIIEA

Arabidopsis Description

At5g62280 [Source:UniProtKB/TrEMBL;Acc:Q9LVA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.