CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21045	Canola	cytosol	94.04	94.04
CDY15992	Canola	cytosol	89.45	89.45
CDY26557	Canola	cytosol	88.53	88.53
AT1G12320.1	Thale cress	cytosol	80.28	82.55
CDX98072	Canola	cytosol	80.73	80.0
CDY30071	Canola	cytosol	72.48	76.7
CDY34691	Canola	cytosol	66.06	64.29
CDY59673	Canola	cytosol	65.6	63.84
CDY25700	Canola	cytosol	61.93	60.54
PGSC0003DMT400010101	Potato	cytosol	46.33	46.12
CDX74734	Canola	cytosol	46.33	45.7
Solyc08g079480.2.1	Tomato	cytosol	45.87	45.66
Solyc08g007480.1.1	Tomato	cytosol	45.41	45.41
CDY37036	Canola	cytosol	45.87	44.84
PGSC0003DMT400032504	Potato	cytosol	44.5	44.5
CDY41141	Canola	cytosol	44.5	44.29
CDY52349	Canola	cytosol	44.04	44.24
CDX71783	Canola	cytosol	44.04	44.04
CDY57106	Canola	cytosol	44.95	43.95
CDY51807	Canola	cytosol	22.02	39.34
GSMUA_Achr8P19380_001	Banana	cytosol	37.61	37.79
GSMUA_Achr5P18770_001	Banana	cytosol	35.32	35.48
GSMUA_AchrUn_...	Banana	cytosol	35.32	35.32
TraesCS5B01G325300.1	Wheat	cytosol	31.65	34.16
TraesCS5A01G324500.1	Wheat	cytosol	30.73	33.84
TraesCS5B01G325100.1	Wheat	cytosol	31.65	33.82
HORVU5Hr1G082620.1	Barley	cytosol	31.65	33.82
TraesCS5D01G331200.1	Wheat	cytosol	31.65	33.82
TraesCS5D01G331400.1	Wheat	cytosol, plastid	30.28	32.67
TraesCS5A01G324300.1	Wheat	cytosol	30.28	32.35
Zm00001d018712_P001	Maize	cytosol	33.03	31.03
EER97893	Sorghum	cytosol	33.49	29.55
Os02t0455400-00	Rice	endoplasmic reticulum, plasma membrane	35.78	29.1
GSMUA_Achr11P...	Banana	cytosol	27.06	25.32
CDY69766	Canola	cytosol	26.15	23.46
CDY00273	Canola	cytosol	26.15	23.46
CDY69982	Canola	cytosol	25.23	22.54
CDY16780	Canola	cytosol	25.23	22.54
CDX87243	Canola	cytosol	25.23	22.54
CDX86908	Canola	extracellular	22.94	19.84

Protein Annotations

EnsemblPlants:CDY31260	EnsemblPlantsGene:GSBRNA2T00047413001	InterPro:DUF1442	PANTHER:PTHR33593	PANTHER:PTHR33593:SF2	PFAM:PF07279
ProteinID:CDY31260	ProteinID:CDY31260.1	SEG:seg	UniParc:UPI0004EE9422	UniProt:A0A078GXR2	MapMan:35.2

Description

BnaC08g15550DBnaC08g15550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXR2]

Coordinates

chrLK032269:+:295194..295964

Molecular Weight (calculated)

23740.0 Da

IEP (calculated)

7.557

GRAVY (calculated)

-0.170

Length

218 amino acids

Sequence
(BLAST)

001: MKLVWSPETA SKAYLDTVKS CENLETPDAA ELISAMAAGW NAKLIVETWS YGDAIASSVG LNVASRHANA KHICIVQNTL SESAYLQAIQ EHSSPLNLPE
101: TIIAEEPQSA MKEIQGIDFL VVDWRNKEFA AAALRNAAFG SSGAVVVCRN GYSRNASGFS WTRGLRDRTV VRKVTLPVTG GIEIAYVAAR NSGKTESKKR
201: RWITHVDQSS GEEHVFSI

Best Arabidopsis Sequence Match ( AT1G12320.1 )
(BLAST)

001: MKLVWSPETA SKAYIDTVKS CENLETPDAA ELIAAMAAGW NVKLIVETWS EGDAIASSIG LNVASKHANA KHICIVQNSR SESAYLQAIQ ESSSPLNFPE
101: TIVAEEPGKA MKKLQGVDFL VVDWRNKEFA AAALKNAAFG NRGAVVVCRN GYSSLRRVLR DRKVVRTVTL PVTGGIEIAH VAARNSGKSG NNKRRWITHV
201: DQRSGEEHVF SI

Arabidopsis Description

Ankyrin repeat/KH domain protein (DUF1442) [Source:UniProtKB/TrEMBL;Acc:Q9LNB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.