CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16780	Canola	cytosol	93.85	93.85
AT5G62280.1	Thale cress	cytosol	85.66	88.56
CDY69766	Canola	cytosol	87.7	88.07
CDY00273	Canola	cytosol	86.89	87.24
CDY69982	Canola	cytosol	86.48	86.48
CDX86908	Canola	extracellular	81.97	79.37
VIT_16s0022g01630.t01	Wine grape	cytosol, plastid	53.28	59.36
KRG92460	Soybean	cytosol, plastid	50.0	54.71
KRH38734	Soybean	cytosol, plastid	49.59	54.5
KRH34338	Soybean	cytosol, plastid	49.59	54.02
KRH09236	Soybean	cytosol	38.93	52.49
Solyc03g083500.2.1	Tomato	cytosol	45.08	50.93
PGSC0003DMT400059241	Potato	cytosol, plastid	44.67	50.46
GSMUA_Achr5P18780_001	Banana	cytosol	38.93	44.6
CDY37036	Canola	cytosol	27.05	29.6
CDY51807	Canola	cytosol	14.75	29.51
CDX74734	Canola	cytosol	26.23	28.96
CDY57106	Canola	cytosol	25.82	28.25
CDY41141	Canola	cytosol	24.18	26.94
CDY52349	Canola	cytosol	23.77	26.73
CDX71783	Canola	cytosol	23.77	26.61
CDY26557	Canola	cytosol	22.95	25.69
CDX98072	Canola	cytosol	22.95	25.45
CDY31260	Canola	cytosol	22.54	25.23
CDY21045	Canola	cytosol	22.54	25.23
CDY15992	Canola	cytosol	22.54	25.23
CDY34691	Canola	cytosol	21.72	23.66
CDY59673	Canola	cytosol	21.31	23.21
CDY30071	Canola	cytosol	18.85	22.33
CDY25700	Canola	cytosol	20.08	21.97

Protein Annotations

EnsemblPlants:CDX87243	EnsemblPlantsGene:GSBRNA2T00146183001	Gene3D:3.40.50.150	InterPro:DUF1442	PANTHER:PTHR33593	PANTHER:PTHR33593:SF3
PFAM:PF07279	ProteinID:CDX87243	ProteinID:CDX87243.1	SEG:seg	UniParc:UPI0004EF1879	MapMan:35.2

Description

BnaC09g05580D

Coordinates

chrLK031849:+:1388243..1389184

Molecular Weight (calculated)

27009.1 Da

IEP (calculated)

7.730

GRAVY (calculated)

-0.286

Length

244 amino acids

Sequence
(BLAST)

001: MAFWSAENAT KAYLSTLKTD QRSKEPNVAE FISALAAGNN ARKIAVACAG AANTDILVAL IAAANQTRGQ VVCVLRGIEE LIISKKMLEP SEIHQIHFVV
101: GESSDTNLIN DHFGEADFVL VDCNLVDHQD IVRKIVNHHE ENARSGGGSG VAVVVGYNAF SRGSWRFSDG RKTQFLPIGE GLLVTRVNDN GKYNQKMMMN
201: KNNHHYHHHD RVRKSHWVVK VDKCTGEEHV FRVRVPQGEA IVEA

Best Arabidopsis Sequence Match ( AT5G62280.1 )
(BLAST)

001: MAFWSAENAT KAYLSTLKTD QRTKEPNVAE FISALAAGNS ARKIAVACAG AANADILVAL IAAANQTRGQ VVCVLRGIEE LIISQKMLEP SEIHQIQFVV
101: GESNDDTLIN NHFGEADFVL VDCNLENHQE IVGKILNHHE ENARTGGGSG VAVVVGYNAF SRGSWRFSDG RKTQFLPIGE GLLVTRVNDN QKMMMKNHHR
201: DQVMRKSRWV VKVDKCTGEE HVFRVRVPRG EAIIEA

Arabidopsis Description

At5g62280 [Source:UniProtKB/TrEMBL;Acc:Q9LVA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.