Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69766 | Canola | cytosol | 88.98 | 86.42 |
| Bra035898.1-P | Field mustard | cytosol | 88.56 | 85.66 |
| CDX87243 | Canola | cytosol | 88.56 | 85.66 |
| Bra010072.1-P | Field mustard | cytosol | 88.14 | 85.6 |
| CDY00273 | Canola | cytosol | 88.14 | 85.6 |
| CDY69982 | Canola | cytosol | 88.14 | 85.25 |
| CDY16780 | Canola | cytosol | 87.71 | 84.84 |
| Bra029269.1-P | Field mustard | cytosol | 86.44 | 83.27 |
| CDX86908 | Canola | extracellular | 83.47 | 78.17 |
| VIT_16s0022g01630.t01 | Wine grape | cytosol, plastid | 54.66 | 58.9 |
| KRG92460 | Soybean | cytosol, plastid | 52.54 | 55.61 |
| KRH34338 | Soybean | cytosol, plastid | 52.12 | 54.91 |
| KRH38734 | Soybean | cytosol, plastid | 51.27 | 54.5 |
| KRH09236 | Soybean | cytosol | 40.25 | 52.49 |
| Solyc03g083500.2.1 | Tomato | cytosol | 46.61 | 50.93 |
| PGSC0003DMT400059241 | Potato | cytosol, plastid | 46.19 | 50.46 |
| GSMUA_Achr5P18780_001 | Banana | cytosol | 41.1 | 45.54 |
| AT2G45360.1 | Thale cress | cytosol | 27.54 | 30.23 |
| AT3G60780.1 | Thale cress | plastid | 23.73 | 25.69 |
| AT1G12320.1 | Thale cress | cytosol | 22.03 | 24.53 |
| AT1G62840.1 | Thale cress | cytosol | 22.88 | 24.11 |
Protein Annotations
| Gene3D:3.40.50.150 | MapMan:35.2 | EntrezGene:836349 | UniProt:A0A178UK59 | ProteinID:AED97590.1 | EMBL:AK228759 |
| ArrayExpress:AT5G62280 | EnsemblPlantsGene:AT5G62280 | RefSeq:AT5G62280 | TAIR:AT5G62280 | RefSeq:AT5G62280-TAIR-G | EnsemblPlants:AT5G62280.1 |
| TAIR:AT5G62280.1 | ProteinID:BAA97192.1 | EMBL:BT010755 | EMBL:BT011787 | InterPro:DUF1442 | GO:GO:0005575 |
| GO:GO:0008150 | RefSeq:NP_201034.1 | ProteinID:OAO94123.1 | PFAM:PF07279 | PO:PO:0000013 | PO:PO:0000293 |
| PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009047 | PO:PO:0025022 |
| PANTHER:PTHR33593 | PANTHER:PTHR33593:SF3 | UniProt:Q9LVA8 | UniParc:UPI00000A17FB | SEG:seg | : |
Description
At5g62280 [Source:UniProtKB/TrEMBL;Acc:Q9LVA8]
Coordinates
chr5:+:25016860..25018265
Molecular Weight (calculated)
26011.1 Da
IEP (calculated)
7.238
GRAVY (calculated)
-0.201
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFWSAENAT KAYLSTLKTD QRTKEPNVAE FISALAAGNS ARKIAVACAG AANADILVAL IAAANQTRGQ VVCVLRGIEE LIISQKMLEP SEIHQIQFVV
101: GESNDDTLIN NHFGEADFVL VDCNLENHQE IVGKILNHHE ENARTGGGSG VAVVVGYNAF SRGSWRFSDG RKTQFLPIGE GLLVTRVNDN QKMMMKNHHR
201: DQVMRKSRWV VKVDKCTGEE HVFRVRVPRG EAIIEA
101: GESNDDTLIN NHFGEADFVL VDCNLENHQE IVGKILNHHE ENARTGGGSG VAVVVGYNAF SRGSWRFSDG RKTQFLPIGE GLLVTRVNDN QKMMMKNHHR
201: DQVMRKSRWV VKVDKCTGEE HVFRVRVPRG EAIIEA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.