Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71783 | Canola | cytosol | 82.11 | 82.11 |
| CDY41141 | Canola | cytosol | 82.11 | 81.74 |
| Bra007557.1-P | Field mustard | plastid | 81.65 | 81.28 |
| Bra007560.1-P | Field mustard | cytosol | 80.73 | 81.11 |
| CDY52349 | Canola | cytosol | 80.28 | 80.65 |
| AT2G45360.1 | Thale cress | cytosol | 66.97 | 67.91 |
| VIT_15s0048g00700.t01 | Wine grape | cytosol | 55.05 | 55.56 |
| KRH76237 | Soybean | cytosol | 54.59 | 53.36 |
| KRH65304 | Soybean | cytosol | 53.21 | 50.0 |
| Solyc10g018200.1.1 | Tomato | cytosol | 50.46 | 49.11 |
| AT1G12320.1 | Thale cress | cytosol | 43.58 | 44.81 |
| PGSC0003DMT400024806 | Potato | cytosol | 38.53 | 44.44 |
| AT1G62840.1 | Thale cress | cytosol | 44.04 | 42.86 |
| GSMUA_Achr8P19380_001 | Banana | cytosol | 41.74 | 41.94 |
| GSMUA_Achr5P18770_001 | Banana | cytosol | 37.61 | 37.79 |
| GSMUA_AchrUn_... | Banana | cytosol | 37.61 | 37.61 |
| TraesCS5D01G331200.1 | Wheat | cytosol | 34.86 | 37.25 |
| TraesCS5B01G325100.1 | Wheat | cytosol | 34.4 | 36.76 |
| HORVU5Hr1G082620.1 | Barley | cytosol | 34.4 | 36.76 |
| TraesCS5A01G324500.1 | Wheat | cytosol | 33.03 | 36.36 |
| TraesCS5A01G324300.1 | Wheat | cytosol | 33.95 | 36.27 |
| TraesCS5D01G331400.1 | Wheat | cytosol, plastid | 33.03 | 35.64 |
| TraesCS5B01G325300.1 | Wheat | cytosol | 32.57 | 35.15 |
| Zm00001d018712_P001 | Maize | cytosol | 33.49 | 31.47 |
| EER97893 | Sorghum | cytosol | 34.86 | 30.77 |
| Os02t0455400-00 | Rice | endoplasmic reticulum, plasma membrane | 37.16 | 30.22 |
| AT5G62280.1 | Thale cress | cytosol | 25.69 | 23.73 |
| GSMUA_Achr11P... | Banana | cytosol | 23.85 | 22.32 |
Protein Annotations
| MapMan:35.2 | EntrezGene:825249 | UniProt:A0A178VG28 | ProteinID:AEE80107.1 | ArrayExpress:AT3G60780 | EnsemblPlantsGene:AT3G60780 |
| RefSeq:AT3G60780 | TAIR:AT3G60780 | RefSeq:AT3G60780-TAIR-G | EnsemblPlants:AT3G60780.1 | TAIR:AT3G60780.1 | EMBL:AY086651 |
| Unigene:At.34383 | ProteinID:CAB82682.1 | EMBL:DQ446780 | InterPro:DUF1442 | GO:GO:0008150 | RefSeq:NP_191637.1 |
| ProteinID:OAP04628.1 | PFAM:PF07279 | PO:PO:0000084 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR33593 | PANTHER:PTHR33593:SF2 | UniProt:Q9LZY5 | UniParc:UPI00000A3DE9 | : |
Description
Uncharacterized protein T4C21_190 [Source:UniProtKB/TrEMBL;Acc:Q9LZY5]
Coordinates
chr3:+:22462613..22463833
Molecular Weight (calculated)
23834.7 Da
IEP (calculated)
9.615
GRAVY (calculated)
-0.079
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLVWSPETA SNAYIHTVRS CKSYRDSSVA EFLSATAAGW NTRLIVETWS RGDPIATSVG LAVAAIHTCG RHVCIVPDEE SRSEYEAVMR GAVTSDSTEV
101: MVLDSAEDVV ERISGVDFMV VDSKRHEFVN ALGLAKTSKM GAVLVCKNAT LKSIPGFKWQ GLLRRGTRVV RSVFLPVGRG LEIVHVGASG GGNGLRKIPS
201: RWIKHIDPRS GEEHLFKR
101: MVLDSAEDVV ERISGVDFMV VDSKRHEFVN ALGLAKTSKM GAVLVCKNAT LKSIPGFKWQ GLLRRGTRVV RSVFLPVGRG LEIVHVGASG GGNGLRKIPS
201: RWIKHIDPRS GEEHLFKR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.