Factsheet for VIT_15s0048g00700.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0053g01080.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45360.1	VIT_17s0053g01080.t01	AT1G64630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0241g00100.t01	Wine grape	cytosol	64.35	64.65
AT2G45360.1	Thale cress	cytosol	60.65	60.93
KRH76237	Soybean	cytosol	62.04	60.09
CDY57106	Canola	cytosol	60.19	58.3
KRH65304	Soybean	cytosol	61.11	56.9
Bra040314.1-P	Field mustard	cytosol	58.33	56.5
CDY37036	Canola	cytosol	58.33	56.5
Bra007560.1-P	Field mustard	cytosol	56.02	55.76
CDY52349	Canola	cytosol	55.56	55.3
AT3G60780.1	Thale cress	plastid	55.56	55.05
CDY41141	Canola	cytosol	55.56	54.79
CDX74734	Canola	cytosol	56.02	54.75
Bra004904.1-P	Field mustard	cytosol	56.02	54.75
Bra007557.1-P	Field mustard	plastid	55.09	54.34
CDX71783	Canola	cytosol	54.63	54.13
CDY51807	Canola	cytosol	30.09	53.28
Solyc10g018200.1.1	Tomato	cytosol	50.46	48.66
PGSC0003DMT400024806	Potato	cytosol	41.67	47.62
GSMUA_Achr8P19380_001	Banana	cytosol	44.91	44.7
TraesCS5D01G331200.1	Wheat	cytosol	40.74	43.14
GSMUA_Achr5P18770_001	Banana	cytosol	43.06	42.86
TraesCS5B01G325100.1	Wheat	cytosol	40.28	42.65
HORVU5Hr1G082620.1	Barley	cytosol	39.81	42.16
TraesCS5A01G324300.1	Wheat	cytosol	39.81	42.16
GSMUA_AchrUn_...	Banana	cytosol	41.2	40.83
TraesCS5B01G325300.1	Wheat	cytosol	37.5	40.1
TraesCS5D01G331400.1	Wheat	cytosol, plastid	37.5	40.1
TraesCS5A01G324500.1	Wheat	cytosol	36.57	39.9
Zm00001d018712_P001	Maize	cytosol	38.89	36.21
Os02t0455400-00	Rice	endoplasmic reticulum, plasma membrane	43.98	35.45
EER97893	Sorghum	cytosol	40.28	35.22
VIT_16s0022g01630.t01	Wine grape	cytosol, plastid	28.24	27.85
VIT_15s0046g00720.t01	Wine grape	cytosol	30.09	27.31
GSMUA_Achr11P...	Banana	cytosol	27.31	25.32
VIT_18s0001g03860.t01	Wine grape	cytosol	24.07	24.07

Protein Annotations

ArrayExpress:VIT_15s0048g00700	EMBL:FN596739	EnsemblPlants:VIT_15s0048g00700.t01	EnsemblPlantsGene:VIT_15s0048g00700	EntrezGene:100245353	EntrezGene:LOC100245353
Gene3D:3.40.50.150	InterPro:DUF1442	PANTHER:PTHR33593	PANTHER:PTHR33593:SF7	PFAM:PF07279	ProteinID:CBI38871
ProteinID:CBI38871.3	RefSeq:XP_002273878	RefSeq:XP_002273878.1	UniParc:UPI00015CB2F4	UniProt:D7U7U2	wikigene:100245353
wikigene:LOC100245353	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr15:+:14837974..14838725

Molecular Weight (calculated)

23326.3 Da

IEP (calculated)

10.133

GRAVY (calculated)

0.000

Length

216 amino acids

Sequence
(BLAST)

001: MKLVWSPEIA SKAYIDTVKS SEVFKQSGVA ELIAAMAGGW NAKMIVETWS HGGVVTTSAG LAIAASHTCG RHVCIVPDER SKLAYIKAMH DAGVTSPEVI
101: VGEAEDAAAT LLEVDFLVVD CRRRDFGKVL MFAKISQRGA VLVRKNVNQR SVSGFKWHGV LHRGTRVVRT VYLPVGKGLD IAHIGSSGGV ASSRKGPSRW
201: IRHIDEKSGE EHLIRG

Best Arabidopsis Sequence Match ( AT2G45360.1 )
(BLAST)

001: MKLVWSPETA SDAYIDTVKS CKSDKESGVA EFLSATAAGW NARLIVETWS RGDPITTSVG LAVAATHTGG RHVCIVPDEQ SKLEYVLAMR GFVTTEVVVV
101: GESVENTMEE FPGVDFLVVD SKRREFVRTL RFAKLSNKGA VLVCKNAMHR AISGFKWHDV LKRGTRVVRS VFLPVGSGLD IVHVGATGRG DSRNLRSRWI
201: RHVDHLSGEE HLFRR

Arabidopsis Description

Ankyrin repeat/KH domain protein (DUF1442) [Source:UniProtKB/TrEMBL;Acc:O22136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.