Factsheet for Solyc10g018200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 4
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g082980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45360.1	Solyc08g082980.2.1	AT1G64630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024806	Potato	cytosol	76.34	90.48
VIT_02s0241g00100.t01	Wine grape	cytosol	54.46	56.74
Solyc08g079480.2.1	Tomato	cytosol	54.46	55.71
KRH04025	Soybean	cytosol	53.12	54.34
KRH57302	Soybean	cytosol	50.89	52.78
AT2G45360.1	Thale cress	cytosol	49.55	51.63
CDY41141	Canola	cytosol	50.45	51.6
CDY57106	Canola	cytosol	51.34	51.57
Bra007560.1-P	Field mustard	cytosol	49.55	51.15
Bra007557.1-P	Field mustard	plastid	50.0	51.14
CDX71783	Canola	cytosol	49.55	50.92
CDY52349	Canola	cytosol	49.11	50.69
VIT_15s0048g00700.t01	Wine grape	cytosol	48.66	50.46
AT3G60780.1	Thale cress	plastid	49.11	50.46
CDY37036	Canola	cytosol	50.0	50.22
Bra040314.1-P	Field mustard	cytosol	50.0	50.22
KRH28022	Soybean	cytosol	45.98	49.76
CDX74734	Canola	cytosol	48.66	49.32
Bra004904.1-P	Field mustard	cytosol	48.66	49.32
Solyc08g007480.1.1	Tomato	cytosol	46.43	47.71
KRH76237	Soybean	cytosol	45.98	46.19
KRH65304	Soybean	cytosol	44.2	42.67
CDY51807	Canola	cytosol	23.21	42.62
KRH77415	Soybean	plastid	48.66	42.41
GSMUA_Achr8P19380_001	Banana	cytosol	38.84	40.09
GSMUA_Achr5P18770_001	Banana	cytosol	36.16	37.33
GSMUA_AchrUn_...	Banana	cytosol	36.16	37.16
TraesCS5A01G324500.1	Wheat	cytosol	30.36	34.34
TraesCS5D01G331200.1	Wheat	cytosol	31.25	34.31
HORVU5Hr1G082620.1	Barley	cytosol	30.8	33.82
TraesCS5B01G325100.1	Wheat	cytosol	30.8	33.82
TraesCS5A01G324300.1	Wheat	cytosol	30.36	33.33
TraesCS5D01G331400.1	Wheat	cytosol, plastid	29.91	33.17
TraesCS5B01G325300.1	Wheat	cytosol	29.91	33.17
Zm00001d018712_P001	Maize	cytosol	32.14	31.03
Os02t0455400-00	Rice	endoplasmic reticulum, plasma membrane	36.61	30.6
EER97893	Sorghum	cytosol	33.48	30.36
Solyc03g083500.2.1	Tomato	cytosol	26.79	27.78
Solyc06g034410.2.1	Tomato	cytosol	25.45	26.39
Solyc03g083490.2.1	Tomato	plastid	25.0	26.17
Solyc01g091250.2.1	Tomato	cytosol	23.21	24.07
Solyc01g095920.2.1	Tomato	cytosol	20.98	20.7
GSMUA_Achr11P...	Banana	cytosol	20.98	20.17

Protein Annotations

EnsemblPlants:Solyc10g018200.1.1	EnsemblPlantsGene:Solyc10g018200.1	InterPro:DUF1442	ncoils:Coil	PANTHER:PTHR33593	PANTHER:PTHR33593:SF2
PFAM:PF07279	UniParc:UPI000276C778	UniProt:K4CYU4	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr10:-:7249208..7250720

Molecular Weight (calculated)

24693.6 Da

IEP (calculated)

9.764

GRAVY (calculated)

-0.179

Length

224 amino acids

Sequence
(BLAST)

001: MKLVWSPETA SKAYLETIQT CGISTKSSVA EFLSAMAAGY NARLTVEAWK NDSNINGESI ATSIGLAIAT RHNRGRYICV VPDEKSRLEY VGAMKNSGVA
101: VPEVMVGVAK EVMERLNGVD FLVVDERRSD FISIFNSAKL SNNGAILVCK NGSKIRNIDS NKFSWDSVLD GKVCVVRSVT LPFGSGLEIA YIASKDGSQK
201: VRKYAKRWIR HIDRNSGEEH VIRR

Best Arabidopsis Sequence Match ( AT2G45360.1 )
(BLAST)

001: MKLVWSPETA SDAYIDTVKS CKSDKESGVA EFLSATAAGW NARLIVETWS RGDPITTSVG LAVAATHTGG RHVCIVPDEQ SKLEYVLAMR GFVTTEVVVV
101: GESVENTMEE FPGVDFLVVD SKRREFVRTL RFAKLSNKGA VLVCKNAMHR AISGFKWHDV LKRGTRVVRS VFLPVGSGLD IVHVGATGRG DSRNLRSRWI
201: RHVDHLSGEE HLFRR

Arabidopsis Description

Ankyrin repeat/KH domain protein (DUF1442) [Source:UniProtKB/TrEMBL;Acc:O22136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.