CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41141	Canola	cytosol	97.71	97.26
CDY52349	Canola	cytosol	95.87	96.31
AT3G60780.1	Thale cress	plastid	82.11	82.11
CDY57106	Canola	cytosol	72.02	70.4
CDY37036	Canola	cytosol	68.35	66.82
CDX74734	Canola	cytosol	62.84	61.99
CDY51807	Canola	cytosol	31.19	55.74
KRH76237	Soybean	cytosol	55.96	54.71
VIT_15s0048g00700.t01	Wine grape	cytosol	54.13	54.63
KRH65304	Soybean	cytosol	55.5	52.16
Solyc10g018200.1.1	Tomato	cytosol	50.92	49.55
CDY21045	Canola	cytosol	45.87	45.87
CDX98072	Canola	cytosol	45.41	45.0
CDY15992	Canola	cytosol	44.95	44.95
CDY26557	Canola	cytosol	44.5	44.5
CDY31260	Canola	cytosol	44.04	44.04
PGSC0003DMT400024806	Potato	cytosol	38.07	43.92
GSMUA_Achr8P19380_001	Banana	cytosol	43.12	43.32
CDY30071	Canola	cytosol	39.91	42.23
CDY25700	Canola	cytosol	42.2	41.26
CDY59673	Canola	cytosol	42.2	41.07
CDY34691	Canola	cytosol	42.2	41.07
GSMUA_Achr5P18770_001	Banana	cytosol	39.91	40.09
TraesCS5D01G331200.1	Wheat	cytosol	35.78	38.24
TraesCS5A01G324500.1	Wheat	cytosol	34.4	37.88
TraesCS5B01G325100.1	Wheat	cytosol	35.32	37.75
HORVU5Hr1G082620.1	Barley	cytosol	35.32	37.75
TraesCS5D01G331400.1	Wheat	cytosol, plastid	34.86	37.62
TraesCS5A01G324300.1	Wheat	cytosol	34.86	37.25
GSMUA_AchrUn_...	Banana	cytosol	36.24	36.24
TraesCS5B01G325300.1	Wheat	cytosol	33.49	36.14
Zm00001d018712_P001	Maize	cytosol	35.32	33.19
Os02t0455400-00	Rice	endoplasmic reticulum, plasma membrane	38.99	31.72
EER97893	Sorghum	cytosol	35.32	31.17
CDY69766	Canola	cytosol	27.98	25.1
CDY00273	Canola	cytosol	27.52	24.69
GSMUA_Achr11P...	Banana	cytosol	26.15	24.46
CDY69982	Canola	cytosol	27.06	24.18
CDX87243	Canola	cytosol	26.61	23.77
CDY16780	Canola	cytosol	26.15	23.36
CDX86908	Canola	extracellular	25.23	21.83

Protein Annotations

EnsemblPlants:CDX71783	EnsemblPlantsGene:GSBRNA2T00155493001	Gene3D:3.40.50.150	InterPro:DUF1442	PANTHER:PTHR33593	PANTHER:PTHR33593:SF2
PFAM:PF07279	ProteinID:CDX71783	ProteinID:CDX71783.1	UniParc:UPI0004EE7CCC	MapMan:35.2	:

Description

BnaC08g30910D

Coordinates

chrLK031795:-:531590..532474

Molecular Weight (calculated)

24023.0 Da

IEP (calculated)

10.179

GRAVY (calculated)

-0.168

Length

218 amino acids

Sequence
(BLAST)

001: MKLVWSPETA FNAYIHTVRK CKSYKESSVA EYLSATAAGW NTRLIVETWK RGDPIATSVG LAVAAIHTRG RHICIVPDEE SRLEYETVMK GAVVSEATEI
101: VVGDSVEDVV DRLSGVDFLV VDSKRGEYVK ALGLANTSKM GAVLVCKNAT QKSIPGFKWH RVLRRGTRVV RSVFLPVGRG LDIAHVGASG GGDLKKVHSR
201: WIKHVDPRSG EEHLFKRK

Best Arabidopsis Sequence Match ( AT3G60780.1 )
(BLAST)

001: MRLVWSPETA SNAYIHTVRS CKSYRDSSVA EFLSATAAGW NTRLIVETWS RGDPIATSVG LAVAAIHTCG RHVCIVPDEE SRSEYEAVMR GAVTSDSTEV
101: MVLDSAEDVV ERISGVDFMV VDSKRHEFVN ALGLAKTSKM GAVLVCKNAT LKSIPGFKWQ GLLRRGTRVV RSVFLPVGRG LEIVHVGASG GGNGLRKIPS
201: RWIKHIDPRS GEEHLFKR

Arabidopsis Description

Uncharacterized protein T4C21_190 [Source:UniProtKB/TrEMBL;Acc:Q9LZY5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.