Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400031918 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45360.1 | PGSC0003DMT400031918 | AT1G64630.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g018200.1.1 | Tomato | cytosol | 90.48 | 76.34 |
| VIT_02s0241g00100.t01 | Wine grape | cytosol | 49.74 | 43.72 |
| PGSC0003DMT400010101 | Potato | cytosol | 49.74 | 42.92 |
| CDY51807 | Canola | cytosol | 27.51 | 42.62 |
| KRH04025 | Soybean | cytosol | 48.68 | 42.01 |
| VIT_15s0048g00700.t01 | Wine grape | cytosol | 47.62 | 41.67 |
| KRH57302 | Soybean | cytosol | 46.03 | 40.28 |
| CDY57106 | Canola | cytosol | 46.56 | 39.46 |
| Bra004904.1-P | Field mustard | cytosol | 46.03 | 39.37 |
| CDX74734 | Canola | cytosol | 46.03 | 39.37 |
| AT2G45360.1 | Thale cress | cytosol | 44.44 | 39.07 |
| AT3G60780.1 | Thale cress | plastid | 44.44 | 38.53 |
| Bra007560.1-P | Field mustard | cytosol | 43.92 | 38.25 |
| KRH28022 | Soybean | cytosol | 41.8 | 38.16 |
| Bra040314.1-P | Field mustard | cytosol | 44.97 | 38.12 |
| CDY37036 | Canola | cytosol | 44.97 | 38.12 |
| KRH76237 | Soybean | cytosol | 44.97 | 38.12 |
| CDX71783 | Canola | cytosol | 43.92 | 38.07 |
| Bra007557.1-P | Field mustard | plastid | 43.92 | 37.9 |
| CDY41141 | Canola | cytosol | 43.92 | 37.9 |
| CDY52349 | Canola | cytosol | 43.39 | 37.79 |
| PGSC0003DMT400032504 | Potato | cytosol | 42.86 | 37.16 |
| KRH65304 | Soybean | cytosol | 42.86 | 34.91 |
| GSMUA_Achr8P19380_001 | Banana | cytosol | 38.1 | 33.18 |
| KRH77415 | Soybean | plastid | 44.97 | 33.07 |
| GSMUA_AchrUn_... | Banana | cytosol | 34.39 | 29.82 |
| GSMUA_Achr5P18770_001 | Banana | cytosol | 33.86 | 29.49 |
| TraesCS5D01G331200.1 | Wheat | cytosol | 28.57 | 26.47 |
| TraesCS5A01G324500.1 | Wheat | cytosol | 27.51 | 26.26 |
| HORVU5Hr1G082620.1 | Barley | cytosol | 28.04 | 25.98 |
| TraesCS5B01G325100.1 | Wheat | cytosol | 28.04 | 25.98 |
| TraesCS5A01G324300.1 | Wheat | cytosol | 28.04 | 25.98 |
| TraesCS5D01G331400.1 | Wheat | cytosol, plastid | 26.98 | 25.25 |
| TraesCS5B01G325300.1 | Wheat | cytosol | 26.98 | 25.25 |
| Os02t0455400-00 | Rice | endoplasmic reticulum, plasma membrane | 33.86 | 23.88 |
| Zm00001d018712_P001 | Maize | cytosol | 28.57 | 23.28 |
| EER97893 | Sorghum | cytosol | 29.63 | 22.67 |
| PGSC0003DMT400059241 | Potato | cytosol, plastid | 23.81 | 20.83 |
| PGSC0003DMT400066768 | Potato | extracellular | 20.11 | 20.65 |
| PGSC0003DMT400072045 | Potato | extracellular | 22.22 | 19.72 |
| PGSC0003DMT400059243 | Potato | cytosol | 21.16 | 18.69 |
| PGSC0003DMT400000636 | Potato | cytosol | 22.22 | 16.67 |
| GSMUA_Achr11P... | Banana | cytosol | 17.99 | 14.59 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400024806 | EnsemblPlantsGene:PGSC0003DMG400009590 | InterPro:DUF1442 | PANTHER:PTHR33593 | PANTHER:PTHR33593:SF2 | PFAM:PF07279 |
| PGSC:PGSC0003DMG400009590 | UniParc:UPI0002954448 | UniProt:M1AKM9 | MapMan:35.2 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400009590]
Coordinates
chr10:-:40571021..40572206
Molecular Weight (calculated)
21066.4 Da
IEP (calculated)
9.824
GRAVY (calculated)
-0.275
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGYNAKLT VEAWKSDSKI NGESIATSIG LAIAIKHNRG RYVCVVPDEK SRLEYVGAMQ NSGVALPEVM VGEAKEVMER LNGVEFLVVD ERRSDFISIF
101: NSAKLSHHGA ILMCKDGSKI RNIDSNKFSW DTVLNGKVCV VRSVTLPFGN GLEIAYIASK DGNQKVRKYA KRWIRHIDRN SGEEHVIRR
101: NSAKLSHHGA ILMCKDGSKI RNIDSNKFSW DTVLNGKVCV VRSVTLPFGN GLEIAYIASK DGNQKVRKYA KRWIRHIDRN SGEEHVIRR
001: MRLVWSPETA SNAYIHTVRS CKSYRDSSVA EFLSATAAGW NTRLIVETWS RGDPIATSVG LAVAAIHTCG RHVCIVPDEE SRSEYEAVMR GAVTSDSTEV
101: MVLDSAEDVV ERISGVDFMV VDSKRHEFVN ALGLAKTSKM GAVLVCKNAT LKSIPGFKWQ GLLRRGTRVV RSVFLPVGRG LEIVHVGASG GGNGLRKIPS
201: RWIKHIDPRS GEEHLFKR
101: MVLDSAEDVV ERISGVDFMV VDSKRHEFVN ALGLAKTSKM GAVLVCKNAT LKSIPGFKWQ GLLRRGTRVV RSVFLPVGRG LEIVHVGASG GGNGLRKIPS
201: RWIKHIDPRS GEEHLFKR
Arabidopsis Description
Uncharacterized protein T4C21_190 [Source:UniProtKB/TrEMBL;Acc:Q9LZY5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.