Factsheet for PGSC0003DMT400032504

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007480.1.1	Tomato	cytosol	92.2	92.2
PGSC0003DMT400010101	Potato	cytosol	72.02	71.69
Bra019758.1-P	Field mustard	cytosol	48.17	47.73
CDX98072	Canola	cytosol	48.17	47.73
CDY15992	Canola	cytosol	47.25	47.25
AT1G12320.1	Thale cress	cytosol	45.87	47.17
AT1G62840.1	Thale cress	cytosol	48.17	46.88
CDY26557	Canola	cytosol	46.79	46.79
Bra026975.1-P	Field mustard	cytosol	46.79	46.79
CDY30071	Canola	cytosol	43.58	46.12
CDY21045	Canola	cytosol	45.87	45.87
Bra016780.1-P	Field mustard	cytosol	44.95	44.95
CDY34691	Canola	cytosol	45.87	44.64
CDY31260	Canola	cytosol	44.5	44.5
Bra034527.1-P	Field mustard	cytosol	45.41	44.2
CDY59673	Canola	cytosol	45.41	44.2
PGSC0003DMT400024806	Potato	cytosol	37.16	42.86
CDY25700	Canola	cytosol	43.12	42.15
GSMUA_Achr8P19380_001	Banana	cytosol	38.07	38.25
GSMUA_AchrUn_...	Banana	cytosol	35.78	35.78
GSMUA_Achr5P18770_001	Banana	cytosol	34.86	35.02
TraesCS5D01G331400.1	Wheat	cytosol, plastid	31.19	33.66
HORVU5Hr1G082620.1	Barley	cytosol	31.19	33.33
TraesCS5D01G331200.1	Wheat	cytosol	31.19	33.33
TraesCS5B01G325100.1	Wheat	cytosol	31.19	33.33
TraesCS5A01G324500.1	Wheat	cytosol	30.28	33.33
TraesCS5B01G325300.1	Wheat	cytosol	30.28	32.67
TraesCS5A01G324300.1	Wheat	cytosol	30.28	32.35
Os02t0455400-00	Rice	endoplasmic reticulum, plasma membrane	36.7	29.85
PGSC0003DMT400059241	Potato	cytosol, plastid	29.36	29.63
Zm00001d018712_P001	Maize	cytosol	30.73	28.88
EER97893	Sorghum	cytosol	32.57	28.74
PGSC0003DMT400072045	Potato	extracellular	27.98	28.64
PGSC0003DMT400059243	Potato	cytosol	27.52	28.04
PGSC0003DMT400000636	Potato	cytosol	29.36	25.4
PGSC0003DMT400066768	Potato	extracellular	20.64	24.46
GSMUA_Achr11P...	Banana	cytosol	24.77	23.18

Protein Annotations

EnsemblPlants:PGSC0003DMT400032504	EnsemblPlantsGene:PGSC0003DMG400012483	EntrezGene:102604889	Gene3D:3.40.50.150	InterPro:DUF1442	PANTHER:PTHR33593
PANTHER:PTHR33593:SF2	PFAM:PF07279	PGSC:PGSC0003DMG400012483	RefSeq:XP_006358360.1	UniParc:UPI000296B412	UniProt:M1AXI9
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012483]

Coordinates

chr8:-:424462..426718

Molecular Weight (calculated)

23942.8 Da

IEP (calculated)

7.949

GRAVY (calculated)

-0.139

Length

218 amino acids

Sequence
(BLAST)

001: MKLVWSPEKA SKAYLDTVKS CGLLQESTEA ELISAMAAGW NAQMIVETWS RGGATSTSIG LSNAIHQTGG RHICIVPNDD TKTEYKSIVE KITGMSPEIV
101: VDEAEETLES LTGIDFLVVD CERNDFSTIL KVVKLGNRGA VLVCKNVSSR AVSDFRWRSV LDEKSKIVRS VFLPVGKGLD IAHVGAVATG KSVYGGKMEK
201: KWIRRFDRES GEEFVIRK

Best Arabidopsis Sequence Match ( AT2G45360.1 )
(BLAST)

001: MKLVWSPETA SDAYIDTVKS CKSDKESGVA EFLSATAAGW NARLIVETWS RGDPITTSVG LAVAATHTGG RHVCIVPDEQ SKLEYVLAMR GFVTTEVVVV
101: GESVENTMEE FPGVDFLVVD SKRREFVRTL RFAKLSNKGA VLVCKNAMHR AISGFKWHDV LKRGTRVVRS VFLPVGSGLD IVHVGATGRG DSRNLRSRWI
201: RHVDHLSGEE HLFRR

Arabidopsis Description

Ankyrin repeat/KH domain protein (DUF1442) [Source:UniProtKB/TrEMBL;Acc:O22136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.