Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15992 | Canola | cytosol | 84.91 | 82.57 |
| Bra026975.1-P | Field mustard | cytosol | 83.96 | 81.65 |
| CDY26557 | Canola | cytosol | 83.96 | 81.65 |
| CDY31260 | Canola | cytosol | 82.55 | 80.28 |
| CDY21045 | Canola | cytosol | 80.19 | 77.98 |
| Bra016780.1-P | Field mustard | cytosol | 79.72 | 77.52 |
| Bra019758.1-P | Field mustard | cytosol | 80.19 | 77.27 |
| CDX98072 | Canola | cytosol | 80.19 | 77.27 |
| CDY30071 | Canola | cytosol | 70.75 | 72.82 |
| AT1G62840.1 | Thale cress | cytosol | 64.62 | 61.16 |
| PGSC0003DMT400010101 | Potato | cytosol | 48.58 | 47.03 |
| AT2G45360.1 | Thale cress | cytosol | 47.64 | 46.98 |
| Solyc08g079480.2.1 | Tomato | cytosol | 48.11 | 46.58 |
| Solyc08g007480.1.1 | Tomato | cytosol | 47.64 | 46.33 |
| PGSC0003DMT400032504 | Potato | cytosol | 47.17 | 45.87 |
| AT3G60780.1 | Thale cress | plastid | 44.81 | 43.58 |
| GSMUA_Achr8P19380_001 | Banana | cytosol | 39.15 | 38.25 |
| GSMUA_Achr5P18770_001 | Banana | cytosol | 35.85 | 35.02 |
| TraesCS5A01G324500.1 | Wheat | cytosol | 32.55 | 34.85 |
| TraesCS5B01G325300.1 | Wheat | cytosol | 33.02 | 34.65 |
| GSMUA_AchrUn_... | Banana | cytosol | 35.38 | 34.4 |
| TraesCS5B01G325100.1 | Wheat | cytosol | 33.02 | 34.31 |
| TraesCS5D01G331200.1 | Wheat | cytosol | 33.02 | 34.31 |
| HORVU5Hr1G082620.1 | Barley | cytosol | 32.55 | 33.82 |
| TraesCS5D01G331400.1 | Wheat | cytosol, plastid | 32.08 | 33.66 |
| TraesCS5A01G324300.1 | Wheat | cytosol | 32.08 | 33.33 |
| Zm00001d018712_P001 | Maize | cytosol | 35.38 | 32.33 |
| EER97893 | Sorghum | cytosol | 36.32 | 31.17 |
| Os02t0455400-00 | Rice | endoplasmic reticulum, plasma membrane | 37.26 | 29.48 |
| GSMUA_Achr11P... | Banana | cytosol | 26.89 | 24.46 |
| AT5G62280.1 | Thale cress | cytosol | 24.53 | 22.03 |
Protein Annotations
| MapMan:35.2 | EntrezGene:837786 | UniProt:A0A178WGP8 | ProteinID:AAF79629.1 | ProteinID:AEE28866.1 | ArrayExpress:AT1G12320 |
| EnsemblPlantsGene:AT1G12320 | RefSeq:AT1G12320 | TAIR:AT1G12320 | RefSeq:AT1G12320-TAIR-G | EnsemblPlants:AT1G12320.1 | TAIR:AT1G12320.1 |
| EMBL:AY063798 | EMBL:AY117198 | InterPro:DUF1442 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_172696.1 | ProteinID:OAP17549.1 | PFAM:PF07279 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025195 | PANTHER:PTHR33593 | PANTHER:PTHR33593:SF2 | UniProt:Q9LNB3 |
| UniParc:UPI00000A3BB6 | SEG:seg | : | : | : | : |
Description
Ankyrin repeat/KH domain protein (DUF1442) [Source:UniProtKB/TrEMBL;Acc:Q9LNB3]
Coordinates
chr1:+:4186624..4190342
Molecular Weight (calculated)
23087.5 Da
IEP (calculated)
9.531
GRAVY (calculated)
-0.198
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLVWSPETA SKAYIDTVKS CENLETPDAA ELIAAMAAGW NVKLIVETWS EGDAIASSIG LNVASKHANA KHICIVQNSR SESAYLQAIQ ESSSPLNFPE
101: TIVAEEPGKA MKKLQGVDFL VVDWRNKEFA AAALKNAAFG NRGAVVVCRN GYSSLRRVLR DRKVVRTVTL PVTGGIEIAH VAARNSGKSG NNKRRWITHV
201: DQRSGEEHVF SI
101: TIVAEEPGKA MKKLQGVDFL VVDWRNKEFA AAALKNAAFG NRGAVVVCRN GYSSLRRVLR DRKVVRTVTL PVTGGIEIAH VAARNSGKSG NNKRRWITHV
201: DQRSGEEHVF SI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.