CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011407.1-P	Field mustard	plastid	80.0	97.27
CDX75318	Canola	plastid	84.14	95.31
AT4G33030.1	Thale cress	plastid	75.17	91.4
CDX72385	Canola	plastid	75.52	91.25
CDY13514	Canola	plastid	75.34	91.23
GSMUA_Achr10P...	Banana	cytosol	58.45	86.92
Os05t0387200-01	Rice	plastid	64.48	78.08
KRH66819	Soybean	plastid	63.62	77.85
KRG95142	Soybean	plastid	63.79	77.57
PGSC0003DMT400049056	Potato	cytosol	64.14	77.34
VIT_04s0008g01190.t01	Wine grape	plastid	64.48	77.11
Solyc08g063080.2.1	Tomato	plastid	63.62	76.88
HORVU1Hr1G056630.1	Barley	plastid	62.41	75.73
HORVU1Hr1G056610.1	Barley	plastid	62.41	75.73
TraesCS1A01G241900.1	Wheat	plastid	62.24	75.52
TraesCS1D01G241800.2	Wheat	plastid	62.24	75.52
TraesCS1B01G253500.1	Wheat	plastid	61.9	75.1
Zm00001d009967_P001	Maize	plastid	61.03	75.0
EES18158	Sorghum	plastid	61.72	74.9

Protein Annotations

EnsemblPlants:CDX68933	EnsemblPlantsGene:GSBRNA2T00130677001	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:A0A078C1F9	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR43000
PANTHER:PTHR43000:SF10	PFAM:PF01370	ProteinID:CDX68933	ProteinID:CDX68933.1	SEG:seg	SUPFAM:SSF51735
UniParc:UPI0004EF2696	MapMan:5.3.6	:	:	:	:

Description

BnaC01g05200D

Coordinates

chrLK031789:+:2099444..2102178

Molecular Weight (calculated)

65165.8 Da

IEP (calculated)

9.169

GRAVY (calculated)

-0.308

Length

580 amino acids

Sequence
(BLAST)

001: MVRKKKKCPV YHFRDLSFEL DIYRLDWFSD FFVVVKQRDS SLSSSSRLSP QEERPEESQG KALTLKLFQS SPTLSKFQSA HFSKLSAVNV FLIQSRTNLL
101: KMAQLLSSPC PSVISLSSSS KNSVKPFGLN QTFFNRPQVL STSSLKGILF QEKKPTRGRR SCVFRAAISQ QSPYSETSTN DSSSSKPKRV MVIGGDGYCG
201: WATALHLSKK NYEVAIVDNL VRRLFDHQLG LESLTPIASI HDRISRWKAL TGKTIELYVG DICDFEFLAE SFKSFQPDSV VHFGEQRSAP YSMIDRSRAV
301: FTQHNNVIGT LNVLFAIKEF GEECHLVKLG TMGEYGTPNI DIEEGYITIT HNGRTDTLPY PKQASSFYHL SKVHDSHNIA FTCKAWGIRA TDLNQGVVYG
401: VKTDETEMHE ELRNRLDYDA VFGTALNRFC VQAAVGHPLT VYGKGGQTRG YLDIRDTVQC VELAIANPAK AGEFRVFNQF TEQFSVNELA SLVTKAGLKL
501: GLDVTKMTVP NPRVEAEEHY YNAKHTKLME LGLEPHYLSE SLLDSLLNFA VQFKDRVDTK QIMPSVSWKK IGVKTKSMGA

Best Arabidopsis Sequence Match ( AT4G33030.1 )
(BLAST)

001: MAHLLSASCP SVISLSSSSS KNSVKPFVSG QTFFNAQLLS RSSLKGLLFQ EKKPRKSCVF RATAVPITQQ APPETSTNNS SSKPKRVMVI GGDGYCGWAT
101: ALHLSKKNYE VCIVDNLVRR LFDHQLGLES LTPIASIHDR ISRWKALTGK SIELYVGDIC DFEFLAESFK SFEPDSVVHF GEQRSAPYSM IDRSRAVYTQ
201: HNNVIGTLNV LFAIKEFGEE CHLVKLGTMG EYGTPNIDIE EGYITITHNG RTDTLPYPKQ ASSFYHLSKV HDSHNIAFTC KAWGIRATDL NQGVVYGVKT
301: DETEMHEELR NRLDYDAVFG TALNRFCVQA AVGHPLTVYG KGGQTRGYLD IRDTVQCVEI AIANPAKAGE FRVFNQFTEQ FSVNELASLV TKAGSKLGLD
401: VKKMTVPNPR VEAEEHYYNA KHTKLMELGL EPHYLSDSLL DSLLNFAVQF KDRVDTKQIM PSVSWKKIGV KTKSMTT

Arabidopsis Description

SQD1UDP-sulfoquinovose synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48917]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.