Factsheet for VIT_04s0008g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	74.02	92.05
PGSC0003DMT400049056	Potato	cytosol	81.24	81.91
Solyc08g063080.2.1	Tomato	plastid	80.62	81.46
KRH66819	Soybean	plastid	79.18	81.01
KRG95142	Soybean	plastid	78.76	80.08
AT4G33030.1	Thale cress	plastid	78.14	79.45
Os05t0387200-01	Rice	plastid	78.35	79.33
Bra037029.1-P	Field mustard	plastid	77.94	78.91
CDY13514	Canola	plastid	77.94	78.91
Bra011407.1-P	Field mustard	plastid	77.53	78.83
Zm00001d009967_P001	Maize	plastid	76.7	78.81
CDX72385	Canola	plastid	77.53	78.33
EES18158	Sorghum	plastid	77.11	78.24
TraesCS1A01G241900.1	Wheat	plastid	76.91	78.03
TraesCS1D01G241800.2	Wheat	plastid	76.91	78.03
HORVU1Hr1G056630.1	Barley	plastid	76.7	77.82
HORVU1Hr1G056610.1	Barley	plastid	76.7	77.82
TraesCS1B01G253500.1	Wheat	plastid	76.49	77.62
CDX75318	Canola	plastid	77.32	73.24
CDX68933	Canola	cytosol	77.11	64.48

Protein Annotations

EntrezGene:100242408	wikigene:100242408	Gene3D:3.40.50.720	Gene3D:3.90.25.10	MapMan:5.3.6	ProteinID:CCB46567
ProteinID:CCB46567.1	InterPro:Epimerase_deHydtase	UniProt:F6H3N4	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0050662	EntrezGene:LOC100242408	wikigene:LOC100242408	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370
PANTHER:PTHR43000	PANTHER:PTHR43000:SF10	SUPFAM:SSF51735	UniParc:UPI00015C8A68	ArrayExpress:VIT_04s0008g01190	EnsemblPlantsGene:VIT_04s0008g01190
EnsemblPlants:VIT_04s0008g01190.t01	unigene:Vvi.21614	RefSeq:XP_002279085	RefSeq:XP_002279085.1	RefSeq:XP_010648349.1	RefSeq:XP_010648350.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:978845..981639

Molecular Weight (calculated)

54364.9 Da

IEP (calculated)

8.695

GRAVY (calculated)

-0.316

Length

485 amino acids

Sequence
(BLAST)

001: MAHLLSTSCS LKITSCRKPH SKQLNESSNA FPAYFSLKTT KDLYCPFGSF VVQRGKQRRI CTVRATTLPL DQEAPTQPGS VFHQNSNGPS PPKRVMVIGG
101: DGYCGWATAL HLSNKNYEVA IVDNLVRRLF DHQLGLDSLT PISSIHNRIR RWKSLTGKSI QLYIGDICDF EFLSESFKSF EPDAVVHFGE QRSAPYSMID
201: RSRAVFTQHN NVIGTLNVLF AIKEFREQCH LVKLGTMGEY GTPNIDIEEG YITITHNGRT DTLPYPKQAS SFYHLSKVHD SNNIAFTCKA WGIRATDLNQ
301: GVVYGVRTDE TEMHEELCNR FDYDGVFGTA LNRFCVQAAV GHPLTVYGKG GQTRGYLDIR DTVQCVELAI ANPAQRGEFR VFNQFTEQFS VNDLATLVTK
401: AGKKLGLDVQ TISVPNPRVE AEEHYYNAKH TKLIELGLKP HLLSDSLLDS LLNFAVKFKD RVDTKQIMPS VSWRKIGVKP KTVSA

Best Arabidopsis Sequence Match ( AT4G33030.1 )
(BLAST)

001: MAHLLSASCP SVISLSSSSS KNSVKPFVSG QTFFNAQLLS RSSLKGLLFQ EKKPRKSCVF RATAVPITQQ APPETSTNNS SSKPKRVMVI GGDGYCGWAT
101: ALHLSKKNYE VCIVDNLVRR LFDHQLGLES LTPIASIHDR ISRWKALTGK SIELYVGDIC DFEFLAESFK SFEPDSVVHF GEQRSAPYSM IDRSRAVYTQ
201: HNNVIGTLNV LFAIKEFGEE CHLVKLGTMG EYGTPNIDIE EGYITITHNG RTDTLPYPKQ ASSFYHLSKV HDSHNIAFTC KAWGIRATDL NQGVVYGVKT
301: DETEMHEELR NRLDYDAVFG TALNRFCVQA AVGHPLTVYG KGGQTRGYLD IRDTVQCVEI AIANPAKAGE FRVFNQFTEQ FSVNELASLV TKAGSKLGLD
401: VKKMTVPNPR VEAEEHYYNA KHTKLMELGL EPHYLSDSLL DSLLNFAVQF KDRVDTKQIM PSVSWKKIGV KTKSMTT

Arabidopsis Description

SQD1UDP-sulfoquinovose synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48917]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.