Factsheet for Zm00001d009967_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18158	Sorghum	plastid	97.88	96.65
GSMUA_Achr10P...	Banana	cytosol	75.42	91.28
Os05t0387200-01	Rice	plastid	91.1	89.77
TraesCS1A01G241900.1	Wheat	plastid	89.83	88.7
TraesCS1D01G241800.2	Wheat	plastid	89.62	88.49
HORVU1Hr1G056610.1	Barley	plastid	89.62	88.49
HORVU1Hr1G056630.1	Barley	plastid	89.62	88.49
TraesCS1B01G253500.1	Wheat	plastid	89.41	88.28
PGSC0003DMT400049056	Potato	cytosol	81.57	80.04
Solyc08g063080.2.1	Tomato	plastid	81.14	79.79
KRH66819	Soybean	plastid	77.97	77.64
KRG95142	Soybean	plastid	77.97	77.15
VIT_04s0008g01190.t01	Wine grape	plastid	78.81	76.7
Bra011407.1-P	Field mustard	plastid	75.42	74.63
AT4G33030.1	Thale cress	plastid	75.42	74.63
CDY13514	Canola	plastid	74.36	73.28
Bra037029.1-P	Field mustard	plastid	74.36	73.28
CDX72385	Canola	plastid	74.36	73.12
CDX75318	Canola	plastid	75.21	69.34
CDX68933	Canola	cytosol	75.0	61.03

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.25.10	MapMan:5.3.6	ProteinID:AQK93172.1	EMBL:BT087974	UniProt:C4JAX7
InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006950	GO:GO:0007154	GO:GO:0008146
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009247	GO:GO:0009507
GO:GO:0009536	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991	GO:GO:0016036	GO:GO:0016740
GO:GO:0050662	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370	PANTHER:PTHR43000	PANTHER:PTHR43000:SF10	SUPFAM:SSF51735
UniParc:UPI0001A4C44C	EnsemblPlantsGene:Zm00001d009967	EnsemblPlants:Zm00001d009967_P001	EnsemblPlants:Zm00001d009967_T001	SEG:seg	:

Description

UDP-sulfoquinovose synthase chloroplastic

Coordinates

chr8:-:92806471..92809519

Molecular Weight (calculated)

52455.3 Da

IEP (calculated)

8.254

GRAVY (calculated)

-0.306

Length

472 amino acids

Sequence
(BLAST)

001: MKMAHLITNC SFQTFSSSPN YCRNIGQLQN SKSSNLSLKS CSRRQKKSYV TCASAAVQGQ TQTPLTGSQQ AYEHSSSKPK KVMVIGGDGY CGWATALHLS
101: NKGYEVAIVD NLVRRAFDNQ LGLDSLTPIT SIQNRVRRWK SLTAKTIQLF IGDICDFEFL SEAFKSFEPD AAVHFGEQRS APYSMIDRSR AVYTQHNNVI
201: GTLNVLFAIK EYSEECHLVK LGTMGEYGTP NIDIEEGFIT ITHNGRTDTL PYPKQASSFY HLSKVHDSHN IAFTCKAWGI RATDLNQGVV YGVRTDETAM
301: HEELSNRFDY DGVFGTALNR FCVQAAVGHP LTVYGKGGQT RGYLDIRDTV QCVELAIANP AKPGEFRVFN QFTEQFSVNE LAKLVTAAGA KLGLEVETKS
401: IPNPRVEAEE HYYNAKHTKL IELGLVPHLL SDSLLDSLLN FAIQYKDRVD TAQIMPSVSW KKMGAKPRTV SV

Best Arabidopsis Sequence Match ( AT4G33030.1 )
(BLAST)

001: MAHLLSASCP SVISLSSSSS KNSVKPFVSG QTFFNAQLLS RSSLKGLLFQ EKKPRKSCVF RATAVPITQQ APPETSTNNS SSKPKRVMVI GGDGYCGWAT
101: ALHLSKKNYE VCIVDNLVRR LFDHQLGLES LTPIASIHDR ISRWKALTGK SIELYVGDIC DFEFLAESFK SFEPDSVVHF GEQRSAPYSM IDRSRAVYTQ
201: HNNVIGTLNV LFAIKEFGEE CHLVKLGTMG EYGTPNIDIE EGYITITHNG RTDTLPYPKQ ASSFYHLSKV HDSHNIAFTC KAWGIRATDL NQGVVYGVKT
301: DETEMHEELR NRLDYDAVFG TALNRFCVQA AVGHPLTVYG KGGQTRGYLD IRDTVQCVEI AIANPAKAGE FRVFNQFTEQ FSVNELASLV TKAGSKLGLD
401: VKKMTVPNPR VEAEEHYYNA KHTKLMELGL EPHYLSDSLL DSLLNFAVQF KDRVDTKQIM PSVSWKKIGV KTKSMTT

Arabidopsis Description

SQD1UDP-sulfoquinovose synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48917]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.