Factsheet for Solyc08g063080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049056	Potato	cytosol	98.54	98.34
GSMUA_Achr10P...	Banana	cytosol	72.29	88.97
Zm00001d009967_P001	Maize	plastid	79.79	81.14
EES18158	Sorghum	plastid	80.42	80.75
VIT_04s0008g01190.t01	Wine grape	plastid	81.46	80.62
KRH66819	Soybean	plastid	79.58	80.59
KRG95142	Soybean	plastid	80.0	80.5
Os05t0387200-01	Rice	plastid	80.21	80.38
TraesCS1D01G241800.2	Wheat	plastid	79.17	79.5
TraesCS1A01G241900.1	Wheat	plastid	79.17	79.5
HORVU1Hr1G056630.1	Barley	plastid	78.96	79.29
HORVU1Hr1G056610.1	Barley	plastid	78.96	79.29
TraesCS1B01G253500.1	Wheat	plastid	78.75	79.08
AT4G33030.1	Thale cress	plastid	78.54	79.04
Bra011407.1-P	Field mustard	plastid	77.29	77.78
CDY13514	Canola	plastid	76.67	76.83
Bra037029.1-P	Field mustard	plastid	76.67	76.83
CDX72385	Canola	plastid	76.67	76.67
CDX75318	Canola	plastid	77.08	72.27
CDX68933	Canola	cytosol	76.88	63.62

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.25.10	MapMan:5.3.6	UniProt:C0LIR3	InterPro:Epimerase_deHydtase	EMBL:FJ711705
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0050662	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370
PANTHER:PTHR43000	PANTHER:PTHR43000:SF10	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc08g063080.2	EnsemblPlants:Solyc08g063080.2.1	UniParc:UPI000195FF42
SEG:seg	:	:	:	:	:

Description

UDP-sulfoquinovose synthase [Source:UniProtKB/TrEMBL;Acc:C0LIR3]

Coordinates

chr8:-:52632539..52636852

Molecular Weight (calculated)

53279.5 Da

IEP (calculated)

8.161

GRAVY (calculated)

-0.255

Length

480 amino acids

Sequence
(BLAST)

001: MAHLLSTTCS LDVSSSKKLH FKSINQCSTP NPTCFNMGIS FSPLKLSLQS KRSAKYVIRA SAVSMSQEAR TQNDSGSQQT TDGASTRKKV MVIGGDGYCG
101: WATALHLSNK GYEVAIVDNL IRRLFDDQLG LDSLTPISSI HNRIRRWKSL TGKDIQLFVG DICEFEFLAE AFKSFEPDAV VHFGEQRSAP YSMIDRSRAI
201: YTQHNNVIGT LNVLFAIKEF REECHLVKLG TMGEYGTPNI DIEEGYITIT HNGRTDTLPY PKQASSFYHL SKVHDSHNIA FTCKAWGIRA TDLNQGVVYG
301: VRTDETAIHE DLVNRLDYDG VFGTALNRFC VQAAVGHPLT VYGKGGQTRG YLDIRDTVQC VEIAIANPAK PGEFRVFNQF TEQFSVNELA ALVTKAGQKL
401: GLEVKAISVP NPRVEAEEHY YNAKHTKLIE LGLQPHLLSD SLLDSLLNFA VQYKDRVDTK QIMPSVSWKK IGAKPKTVAA

Best Arabidopsis Sequence Match ( AT4G33030.1 )
(BLAST)

001: MAHLLSASCP SVISLSSSSS KNSVKPFVSG QTFFNAQLLS RSSLKGLLFQ EKKPRKSCVF RATAVPITQQ APPETSTNNS SSKPKRVMVI GGDGYCGWAT
101: ALHLSKKNYE VCIVDNLVRR LFDHQLGLES LTPIASIHDR ISRWKALTGK SIELYVGDIC DFEFLAESFK SFEPDSVVHF GEQRSAPYSM IDRSRAVYTQ
201: HNNVIGTLNV LFAIKEFGEE CHLVKLGTMG EYGTPNIDIE EGYITITHNG RTDTLPYPKQ ASSFYHLSKV HDSHNIAFTC KAWGIRATDL NQGVVYGVKT
301: DETEMHEELR NRLDYDAVFG TALNRFCVQA AVGHPLTVYG KGGQTRGYLD IRDTVQCVEI AIANPAKAGE FRVFNQFTEQ FSVNELASLV TKAGSKLGLD
401: VKKMTVPNPR VEAEEHYYNA KHTKLMELGL EPHYLSDSLL DSLLNFAVQF KDRVDTKQIM PSVSWKKIGV KTKSMTT

Arabidopsis Description

SQD1UDP-sulfoquinovose synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48917]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.