CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66819	Soybean	plastid	96.44	97.05
GSMUA_Achr10P...	Banana	cytosol	72.33	88.46
PGSC0003DMT400049056	Potato	cytosol	81.55	80.87
Solyc08g063080.2.1	Tomato	plastid	80.5	80.0
VIT_04s0008g01190.t01	Wine grape	plastid	80.08	78.76
Bra011407.1-P	Field mustard	plastid	78.41	78.41
AT4G33030.1	Thale cress	plastid	77.99	77.99
Zm00001d009967_P001	Maize	plastid	77.15	77.97
EES18158	Sorghum	plastid	77.57	77.41
CDY13514	Canola	plastid	77.36	77.04
Os05t0387200-01	Rice	plastid	77.36	77.04
Bra037029.1-P	Field mustard	plastid	77.36	77.04
CDX72385	Canola	plastid	77.36	76.88
TraesCS1A01G241900.1	Wheat	plastid	76.73	76.57
TraesCS1D01G241800.2	Wheat	plastid	76.73	76.57
HORVU1Hr1G056610.1	Barley	plastid	76.52	76.36
HORVU1Hr1G056630.1	Barley	plastid	76.52	76.36
TraesCS1B01G253500.1	Wheat	plastid	76.31	76.15
CDX75318	Canola	plastid	78.2	72.85
CDX68933	Canola	cytosol	77.57	63.79

Protein Annotations

EMBL:ACUP02012086	EnsemblPlants:KRG95142	EnsemblPlantsGene:GLYMA_19G133100	EntrezGene:100816616	Gene3D:3.40.50.720	Gene3D:3.90.25.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR43000	PANTHER:PTHR43000:SF10	PFAM:PF01370	ProteinID:KRG95142	ProteinID:KRG95142.1	SEG:seg
SUPFAM:SSF51735	UniParc:UPI000233E760	UniProt:I1N8V4	MapMan:5.3.6	:	:

Description

hypothetical protein

Coordinates

chr19:+:39435211..39438507

Molecular Weight (calculated)

53424.7 Da

IEP (calculated)

8.284

GRAVY (calculated)

-0.282

Length

477 amino acids

Sequence
(BLAST)

001: MAQLLSSSCS LTVCSRNKPY LKPFDKCSTP FSMKVACNNS KSPFRRLFLQ EQKPRKDSLV VHAAAVSTSQ GTPVQTSSSD PFKQQRVMVI GGDGYCGWAT
101: ALHLSNKGYE VAIVDSLVRR LFDHQLGLDS LTPISSIQNR LQCWKSLTGK TIELYIGDIC DFEFLSETFK SFEPDAVVHF GEQRSAPYSM IDRSRAVYTQ
201: QNNVIGTLNV LFAIKEFREQ CHLVKLGTMG EYGTPNIDIE EGYITITHNG RTDTLPYPKQ ASSFYHLSKV HDSHNIAFTC KAWGIRATDL NQGVVYGVRT
301: DETAMHEELY NRFDYDGIFG TALNRFCVQA AVGHPLTVYG KGGQTRGFLD IRDTVQCVEL AIANPAKPGE FRVFNQFTEQ FSVNQLANLV TKAGEKLGIE
401: VKTINVPNPR VEAEEHYYNC KNTKLVDLGL RPHFLSDSLL DSLLNFAVQY KDRVDTKQIM PSVSWKKIGV KTKTVTA

Best Arabidopsis Sequence Match ( AT4G33030.1 )
(BLAST)

001: MAHLLSASCP SVISLSSSSS KNSVKPFVSG QTFFNAQLLS RSSLKGLLFQ EKKPRKSCVF RATAVPITQQ APPETSTNNS SSKPKRVMVI GGDGYCGWAT
101: ALHLSKKNYE VCIVDNLVRR LFDHQLGLES LTPIASIHDR ISRWKALTGK SIELYVGDIC DFEFLAESFK SFEPDSVVHF GEQRSAPYSM IDRSRAVYTQ
201: HNNVIGTLNV LFAIKEFGEE CHLVKLGTMG EYGTPNIDIE EGYITITHNG RTDTLPYPKQ ASSFYHLSKV HDSHNIAFTC KAWGIRATDL NQGVVYGVKT
301: DETEMHEELR NRLDYDAVFG TALNRFCVQA AVGHPLTVYG KGGQTRGYLD IRDTVQCVEI AIANPAKAGE FRVFNQFTEQ FSVNELASLV TKAGSKLGLD
401: VKKMTVPNPR VEAEEHYYNA KHTKLMELGL EPHYLSDSLL DSLLNFAVQF KDRVDTKQIM PSVSWKKIGV KTKSMTT

Arabidopsis Description

SQD1UDP-sulfoquinovose synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48917]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.