Factsheet for Os05t0387200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18158	Sorghum	plastid	91.44	91.63
Zm00001d009967_P001	Maize	plastid	89.77	91.1
GSMUA_Achr10P...	Banana	cytosol	73.9	90.77
TraesCS1B01G253500.1	Wheat	plastid	90.19	90.38
TraesCS1D01G241800.2	Wheat	plastid	89.98	90.17
TraesCS1A01G241900.1	Wheat	plastid	89.98	90.17
HORVU1Hr1G056630.1	Barley	plastid	89.77	89.96
HORVU1Hr1G056610.1	Barley	plastid	89.77	89.96
PGSC0003DMT400049056	Potato	cytosol	80.79	80.46
Solyc08g063080.2.1	Tomato	plastid	80.38	80.21
VIT_04s0008g01190.t01	Wine grape	plastid	79.33	78.35
Bra011407.1-P	Field mustard	plastid	77.87	78.2
AT4G33030.1	Thale cress	plastid	77.66	77.99
KRH66819	Soybean	plastid	77.04	77.85
KRG95142	Soybean	plastid	77.04	77.36
CDX72385	Canola	plastid	77.04	76.88
Bra037029.1-P	Field mustard	plastid	76.83	76.83
CDY13514	Canola	plastid	76.62	76.62
CDX75318	Canola	plastid	77.87	72.85
CDX68933	Canola	cytosol	78.08	64.48

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.25.10	EntrezGene:4338660	MapMan:5.3.6	ProteinID:AAV31336.1	EMBL:AK065310
ProteinID:BAF17336.1	ProteinID:BAS93815.1	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006950
GO:GO:0007154	GO:GO:0008146	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009247	GO:GO:0009507	GO:GO:0009536	GO:GO:0009605	GO:GO:0009987	GO:GO:0009991
GO:GO:0016036	GO:GO:0016740	GO:GO:0050662	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os05g0387200	EnsemblPlants:Os05t0387200-01
PFAM:PF01370	PANTHER:PTHR43000	PANTHER:PTHR43000:SF10	UniProt:Q60E66	SUPFAM:SSF51735	UniParc:UPI00004503F1
RefSeq:XP_015639746.1	SEG:seg	:	:	:	:

Description

Similar to UDP-sulfoquinovose synthase, chloroplast precursor (EC 3.13.1.1) (Sulfite:UDP-glucose sulfotransferase) (Sulfolipid biosynthesis protein) (SoSQD1). (Os05t0387200-01);Similar to UDP-sulfoquinovose synthase. (Os05t0387200-02)

Coordinates

chr5:+:18738656..18741959

Molecular Weight (calculated)

52874.0 Da

IEP (calculated)

8.340

GRAVY (calculated)

-0.266

Length

479 amino acids

Sequence
(BLAST)

001: MKMAHMVTNC SFSPSPAVKT YSKSPGYCCN VTQFQSSKCS NLVLKSCTAT RPNRPFVARA SAAVQGQTQT PLTGSQQASG HSSSKPKKVM VIGGDGYCGW
101: ATALHLSNKG YEVAIVDNLV RRLFDHQLGL DSLTPIASIQ NRIRRWKALT GKTIQLYVGD ICDFDFLSEA FKSFEPDSAV HFGEQRSAPY SMIDRSRAVF
201: TQHNNVIGTL NVLFAIKEFS EECHLVKLGT MGEYGTPNID IEEGFITITH NGRTDTLPYP KQASSFYHLS KVHDSHNIAF TCKAWGIRAT DLNQGVVYGV
301: RTDETAMHEE LSNRFDYDGV FGTALNRFCV QAAVGHPLTV YGKGGQTRGY LDIRDTVQCV ELAIANPAKP GEFRVFNQFT EQFSVNELAK LVTAAGAKLG
401: LEVQTKSVPN PRVEAEEHYY NAKHTKLMEL GLEPHLLSDS LLDSLLNFAV QYKDRVDTAQ IMPSVSWKKM GAKPKTVSV

Best Arabidopsis Sequence Match ( AT4G33030.1 )
(BLAST)

001: MAHLLSASCP SVISLSSSSS KNSVKPFVSG QTFFNAQLLS RSSLKGLLFQ EKKPRKSCVF RATAVPITQQ APPETSTNNS SSKPKRVMVI GGDGYCGWAT
101: ALHLSKKNYE VCIVDNLVRR LFDHQLGLES LTPIASIHDR ISRWKALTGK SIELYVGDIC DFEFLAESFK SFEPDSVVHF GEQRSAPYSM IDRSRAVYTQ
201: HNNVIGTLNV LFAIKEFGEE CHLVKLGTMG EYGTPNIDIE EGYITITHNG RTDTLPYPKQ ASSFYHLSKV HDSHNIAFTC KAWGIRATDL NQGVVYGVKT
301: DETEMHEELR NRLDYDAVFG TALNRFCVQA AVGHPLTVYG KGGQTRGYLD IRDTVQCVEI AIANPAKAGE FRVFNQFTEQ FSVNELASLV TKAGSKLGLD
401: VKKMTVPNPR VEAEEHYYNA KHTKLMELGL EPHYLSDSLL DSLLNFAVQF KDRVDTKQIM PSVSWKKIGV KTKSMTT

Arabidopsis Description

SQD1UDP-sulfoquinovose synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48917]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.