Factsheet for PGSC0003DMT400049056

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g063080.2.1	Tomato	plastid	98.34	98.54
GSMUA_Achr10P...	Banana	cytosol	72.56	89.49
KRH66819	Soybean	plastid	80.46	81.65
Zm00001d009967_P001	Maize	plastid	80.04	81.57
KRG95142	Soybean	plastid	80.87	81.55
VIT_04s0008g01190.t01	Wine grape	plastid	81.91	81.24
EES18158	Sorghum	plastid	80.46	80.96
Os05t0387200-01	Rice	plastid	80.46	80.79
TraesCS1D01G241800.2	Wheat	plastid	79.42	79.92
TraesCS1A01G241900.1	Wheat	plastid	79.42	79.92
HORVU1Hr1G056630.1	Barley	plastid	79.21	79.71
HORVU1Hr1G056610.1	Barley	plastid	79.21	79.71
AT4G33030.1	Thale cress	plastid	79.0	79.66
TraesCS1B01G253500.1	Wheat	plastid	79.0	79.5
Bra011407.1-P	Field mustard	plastid	77.75	78.41
CDY13514	Canola	plastid	77.13	77.45
Bra037029.1-P	Field mustard	plastid	77.13	77.45
CDX72385	Canola	plastid	77.13	77.29
CDX75318	Canola	plastid	77.55	72.85
CDX68933	Canola	cytosol	77.34	64.14

Protein Annotations

EntrezGene:102597858	Gene3D:3.40.50.720	Gene3D:3.90.25.10	MapMan:5.3.6	ProteinID:CBK27716	ProteinID:CBK27716.1
InterPro:Epimerase_deHydtase	EMBL:FN675930	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0050662
UniProt:M1BN71	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370	EnsemblPlantsGene:PGSC0003DMG400019063	PGSC:PGSC0003DMG400019063	EnsemblPlants:PGSC0003DMT400049056
PANTHER:PTHR43000	PANTHER:PTHR43000:SF10	SUPFAM:SSF51735	UniParc:UPI0002952890	RefSeq:XP_006367838.1	RefSeq:XP_006367839.1
SEG:seg	:	:	:	:	:

Description

UDP-sulfoquinovose synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400019063]

Coordinates

chr8:-:35649304..35653853

Molecular Weight (calculated)

53395.6 Da

IEP (calculated)

8.038

GRAVY (calculated)

-0.258

Length

481 amino acids

Sequence
(BLAST)

001: MAHLLSTTCS LDVSSSNKLH FKSINQCSTP IPTSFNMGIS FSPLKKLSLQ SKRSAKYVVR ASAVSMSQEA RTQNDSGSQQ TTDGASTRKK VMVIGGDGYC
101: GWATALHLSN KGYEVAIVDN LIRRLFDDQL GLDSLTPISS IHNRIRRWKS LTGKDIQLFV GDICEFEFLA EAFKSFEPDA VVHFGEQRSA PYSMIDRSRA
201: IYTQHNNVIG TLNVLFAIKE FREECHLVKL GTMGEYGTPN IDIEEGYITI THNGRTDTLP YPKQASSFYH LSKVHDSHNI AFTCKAWGIR ATDLNQGVVY
301: GVRTDETAMH EELVNRLDYD GVFGTALNRF CVQAAVGHPL TVYGKGGQTR GYLDIRDTVQ CVEIAIANPA KPGEFRVFNQ FTEQFSVNEL AALVTKAGEK
401: LGLEVKAISV PNPRVEAEEH YYNAKHTKLI ELGLQPHLLS DSLLDSLLNF AVQYKDRVDT KQIMPSVSWK KIGAKPKTVA A

Best Arabidopsis Sequence Match ( AT4G33030.1 )
(BLAST)

001: MAHLLSASCP SVISLSSSSS KNSVKPFVSG QTFFNAQLLS RSSLKGLLFQ EKKPRKSCVF RATAVPITQQ APPETSTNNS SSKPKRVMVI GGDGYCGWAT
101: ALHLSKKNYE VCIVDNLVRR LFDHQLGLES LTPIASIHDR ISRWKALTGK SIELYVGDIC DFEFLAESFK SFEPDSVVHF GEQRSAPYSM IDRSRAVYTQ
201: HNNVIGTLNV LFAIKEFGEE CHLVKLGTMG EYGTPNIDIE EGYITITHNG RTDTLPYPKQ ASSFYHLSKV HDSHNIAFTC KAWGIRATDL NQGVVYGVKT
301: DETEMHEELR NRLDYDAVFG TALNRFCVQA AVGHPLTVYG KGGQTRGYLD IRDTVQCVEI AIANPAKAGE FRVFNQFTEQ FSVNELASLV TKAGSKLGLD
401: VKKMTVPNPR VEAEEHYYNA KHTKLMELGL EPHYLSDSLL DSLLNFAVQF KDRVDTKQIM PSVSWKKIGV KTKSMTT

Arabidopsis Description

SQD1UDP-sulfoquinovose synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48917]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.