CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011407.1-P	Field mustard	plastid	91.6	98.32
AT4G33030.1	Thale cress	plastid	85.55	91.82
CDY13514	Canola	plastid	85.55	91.44
CDX72385	Canola	plastid	85.55	91.25
GSMUA_Achr10P...	Banana	cytosol	66.02	86.67
CDX68933	Canola	cytosol	95.31	84.14
KRH66819	Soybean	plastid	72.66	78.48
KRG95142	Soybean	plastid	72.85	78.2
Os05t0387200-01	Rice	plastid	72.85	77.87
PGSC0003DMT400049056	Potato	cytosol	72.85	77.55
VIT_04s0008g01190.t01	Wine grape	plastid	73.24	77.32
Solyc08g063080.2.1	Tomato	plastid	72.27	77.08
HORVU1Hr1G056630.1	Barley	plastid	70.51	75.52
HORVU1Hr1G056610.1	Barley	plastid	70.51	75.52
TraesCS1A01G241900.1	Wheat	plastid	70.31	75.31
TraesCS1D01G241800.2	Wheat	plastid	70.31	75.31
Zm00001d009967_P001	Maize	plastid	69.34	75.21
EES18158	Sorghum	plastid	69.92	74.9
TraesCS1B01G253500.1	Wheat	plastid	69.92	74.9

Protein Annotations

EnsemblPlants:CDX75318	EnsemblPlantsGene:GSBRNA2T00121194001	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:A0A078CJR5	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR43000
PANTHER:PTHR43000:SF10	PFAM:PF01370	ProteinID:CDX75318	ProteinID:CDX75318.1	SEG:seg	SUPFAM:SSF51735
UniParc:UPI0004EE1317	MapMan:5.3.6	:	:	:	:

Description

BnaA01g03840D

Coordinates

chrLK031804:+:634391..637009

Molecular Weight (calculated)

57296.6 Da

IEP (calculated)

8.975

GRAVY (calculated)

-0.264

Length

512 amino acids

Sequence
(BLAST)

001: MRICFGISSF QSSHFSKLSA VNVFLIQSRT NLLKMAQLLS SPCPSVISLS SSKNYIKPFG LNQTFFNHPQ VLSTSSLKGL LFQEKKQTRR RRRSCVFRAA
101: ISQQAPPETS TNDSSSSKPK RVMVIGGDGY CGWATALHLS KKNYEVAIVD NLVRRLFDHQ LGLESLTPIA SIHDRISRWK ALTGKTIELY VGDICDFEFL
201: AESFKSFQPD SVVHFGEQRS APYSMIDRSR AVFTQHNNVI GTLNVLFAIK EFGEECHLVK LGTMGEYGTP NIDIEEGYIT ITHNGRTDTL PYPKQASSFY
301: HLSKVHDSHN IAFTCKAWGI RATDLNQGVV YGVKTDETEM HEELRNRLDY DAVFGTALNR FCVQAAVGHP LTVYGKGGQT RGYLDIRDTV QCVELAIANP
401: GKAGEFRVFN QFTEQFSVNE LASLVTKAGS KLGLDVTKMT VPNPRVEAEE HYYNAKHTKL MELGLEPHYL SESLLDSLLN FAVQFKDRVD TKQIMPSVSW
501: KKIGVKTKSM GA

Best Arabidopsis Sequence Match ( AT4G33030.1 )
(BLAST)

001: MAHLLSASCP SVISLSSSSS KNSVKPFVSG QTFFNAQLLS RSSLKGLLFQ EKKPRKSCVF RATAVPITQQ APPETSTNNS SSKPKRVMVI GGDGYCGWAT
101: ALHLSKKNYE VCIVDNLVRR LFDHQLGLES LTPIASIHDR ISRWKALTGK SIELYVGDIC DFEFLAESFK SFEPDSVVHF GEQRSAPYSM IDRSRAVYTQ
201: HNNVIGTLNV LFAIKEFGEE CHLVKLGTMG EYGTPNIDIE EGYITITHNG RTDTLPYPKQ ASSFYHLSKV HDSHNIAFTC KAWGIRATDL NQGVVYGVKT
301: DETEMHEELR NRLDYDAVFG TALNRFCVQA AVGHPLTVYG KGGQTRGYLD IRDTVQCVEI AIANPAKAGE FRVFNQFTEQ FSVNELASLV TKAGSKLGLD
401: VKKMTVPNPR VEAEEHYYNA KHTKLMELGL EPHYLSDSLL DSLLNFAVQF KDRVDTKQIM PSVSWKKIGV KTKSMTT

Arabidopsis Description

SQD1UDP-sulfoquinovose synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48917]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.