Factsheet for TraesCS1B01G253500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G241900.1	Wheat	plastid	99.16	99.16
TraesCS1D01G241800.2	Wheat	plastid	98.95	98.95
HORVU1Hr1G056630.1	Barley	plastid	98.95	98.95
HORVU1Hr1G056610.1	Barley	plastid	98.95	98.95
Os05t0387200-01	Rice	plastid	90.38	90.19
GSMUA_Achr10P...	Banana	cytosol	73.43	90.0
EES18158	Sorghum	plastid	89.54	89.54
Zm00001d009967_P001	Maize	plastid	88.28	89.41
PGSC0003DMT400049056	Potato	cytosol	79.5	79.0
Solyc08g063080.2.1	Tomato	plastid	79.08	78.75
KRH66819	Soybean	plastid	75.94	76.58
VIT_04s0008g01190.t01	Wine grape	plastid	77.62	76.49
KRG95142	Soybean	plastid	76.15	76.31
AT4G33030.1	Thale cress	plastid	75.94	76.1
Bra011407.1-P	Field mustard	plastid	75.31	75.47
CDY13514	Canola	plastid	74.69	74.53
Bra037029.1-P	Field mustard	plastid	74.69	74.53
CDX72385	Canola	plastid	74.48	74.17
CDX75318	Canola	plastid	74.9	69.92
CDX68933	Canola	cytosol	75.1	61.9

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.25.10	MapMan:5.3.6	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006950	GO:GO:0007154	GO:GO:0008146	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009247	GO:GO:0009507	GO:GO:0009536	GO:GO:0009605	GO:GO:0009987
GO:GO:0009991	GO:GO:0016036	GO:GO:0016740	GO:GO:0050662	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370
PANTHER:PTHR43000	PANTHER:PTHR43000:SF10	SUPFAM:SSF51735	EnsemblPlantsGene:TraesCS1B01G253500	EnsemblPlants:TraesCS1B01G253500.1	TIGR:cd05255
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:447162285..447166953

Molecular Weight (calculated)

52578.4 Da

IEP (calculated)

8.459

GRAVY (calculated)

-0.283

Length

478 amino acids

Sequence
(BLAST)

001: MANLVTNCGF SPSPAVKAHC NSPSYGHNFI RLQNSKSSTS SLNLKSSSKR SNKLYVTCAS TAVQGQTQTP LTGSQQASGH SSSKPKKVMV IGGDGYCGWA
101: TALHLSNKGY EVAIVDNLVR RLFDHQLGLD SLTPIASIQN RIRRWKSLTG KTIQLFIGDI CDFDFLSEAF KSFEPDSAVH FGEQRSAPFS MIDRSRAVYT
201: QNNNVIGTLN VLFAMKEFSE ECHLVKLGTM GEYGTPNIDI EEGFLTITHN GRTDTLPYPK QASSFYHLSK VHDSHNIAFT CKAWGIRATD LNQGVVYGIR
301: TDETAMHEEL SNRLDYDGIF GTALNRFCVQ AAVGHPLTVY GKGGQTRGYL DIRDTVQCVE LAIANPAKPG EFRVFNQFTE QFSVNELAKL VTAAGAKLGL
401: DVQTKSVPNP RVEAEEHYYN AKHSKLSELG LAPHLLSDSL LDSLLNFAVQ YKDRVDMAQI MPSVSWKKMG AKPKTVSV

Best Arabidopsis Sequence Match ( AT4G33030.1 )
(BLAST)

001: MAHLLSASCP SVISLSSSSS KNSVKPFVSG QTFFNAQLLS RSSLKGLLFQ EKKPRKSCVF RATAVPITQQ APPETSTNNS SSKPKRVMVI GGDGYCGWAT
101: ALHLSKKNYE VCIVDNLVRR LFDHQLGLES LTPIASIHDR ISRWKALTGK SIELYVGDIC DFEFLAESFK SFEPDSVVHF GEQRSAPYSM IDRSRAVYTQ
201: HNNVIGTLNV LFAIKEFGEE CHLVKLGTMG EYGTPNIDIE EGYITITHNG RTDTLPYPKQ ASSFYHLSKV HDSHNIAFTC KAWGIRATDL NQGVVYGVKT
301: DETEMHEELR NRLDYDAVFG TALNRFCVQA AVGHPLTVYG KGGQTRGYLD IRDTVQCVEI AIANPAKAGE FRVFNQFTEQ FSVNELASLV TKAGSKLGLD
401: VKKMTVPNPR VEAEEHYYNA KHTKLMELGL EPHYLSDSLL DSLLNFAVQF KDRVDTKQIM PSVSWKKIGV KTKSMTT

Arabidopsis Description

SQD1UDP-sulfoquinovose synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48917]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.