CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009967_P001	Maize	plastid	96.65	97.88
GSMUA_Achr10P...	Banana	cytosol	75.31	92.31
Os05t0387200-01	Rice	plastid	91.63	91.44
TraesCS1A01G241900.1	Wheat	plastid	89.96	89.96
TraesCS1D01G241800.2	Wheat	plastid	89.75	89.75
HORVU1Hr1G056610.1	Barley	plastid	89.75	89.75
HORVU1Hr1G056630.1	Barley	plastid	89.75	89.75
TraesCS1B01G253500.1	Wheat	plastid	89.54	89.54
PGSC0003DMT400049056	Potato	cytosol	80.96	80.46
Solyc08g063080.2.1	Tomato	plastid	80.75	80.42
KRH66819	Soybean	plastid	77.41	78.06
KRG95142	Soybean	plastid	77.41	77.57
VIT_04s0008g01190.t01	Wine grape	plastid	78.24	77.11
AT4G33030.1	Thale cress	plastid	75.31	75.47
Bra011407.1-P	Field mustard	plastid	75.1	75.26
CDY13514	Canola	plastid	74.06	73.9
Bra037029.1-P	Field mustard	plastid	74.06	73.9
CDX72385	Canola	plastid	74.06	73.75
CDX75318	Canola	plastid	74.9	69.92
CDX68933	Canola	cytosol	74.9	61.72

Protein Annotations

Gene3D:3.40.50.720	Gene3D:3.90.25.10	MapMan:5.3.6	EntrezGene:8077955	UniProt:C5YXF3	ncoils:Coil
EnsemblPlants:EES18158	ProteinID:EES18158	ProteinID:EES18158.1	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006950	GO:GO:0007154	GO:GO:0008146	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009247	GO:GO:0009507	GO:GO:0009536	GO:GO:0009605	GO:GO:0009987
GO:GO:0009991	GO:GO:0016036	GO:GO:0016740	GO:GO:0050662	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01370
PANTHER:PTHR43000	PANTHER:PTHR43000:SF10	EnsemblPlantsGene:SORBI_3009G123300	SUPFAM:SSF51735	unigene:Sbi.4556	UniParc:UPI0001A88DAA
RefSeq:XP_002439728.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:47560503..47564447

Molecular Weight (calculated)

52946.9 Da

IEP (calculated)

8.390

GRAVY (calculated)

-0.289

Length

478 amino acids

Sequence
(BLAST)

001: MKMAHLITNC SFSTSPAVQT FSSSPNYCRS VGQLQNSKSS NLSLKSCSRR QKKSYVSCAS AAVQGQTQTP LTGSQQAYEH SSSKPKKVMV IGGDGYCGWA
101: TALHLSNKGY EVAIVDNLVR RLFDHQLGLD SLTPITSIQN RVRRWKSLTG KTIQLFIGDI CDFEFLSEAF KSFEPDAAVH FGEQRSAPYS MIDRSRAVYT
201: QHNNVIGTLN VLFAIKEYSD ECHLVKLGTM GEYGTPNIDI EEGFITITHN GRTDTLPYPK QASSFYHLSK VHDSHNIAFT CKAWGIRATD LNQGVVYGVR
301: TDETALHEEL SNRFDYDGVF GTALNRFCVQ AAVGHPLTVY GKGGQTRGYL DIRDTVQCVE LAIANPAKPG EFRVFNQFTE QFSVNELAKL VTAAGAKLGL
401: EVQTKSVPNP RVEAEEHYYN AKHTKLIELG LVPHLLSDSL LDSLLNFAIQ YKDRVDTAQI MPSVSWKKMG AKPRTVSV

Best Arabidopsis Sequence Match ( AT4G33030.1 )
(BLAST)

001: MAHLLSASCP SVISLSSSSS KNSVKPFVSG QTFFNAQLLS RSSLKGLLFQ EKKPRKSCVF RATAVPITQQ APPETSTNNS SSKPKRVMVI GGDGYCGWAT
101: ALHLSKKNYE VCIVDNLVRR LFDHQLGLES LTPIASIHDR ISRWKALTGK SIELYVGDIC DFEFLAESFK SFEPDSVVHF GEQRSAPYSM IDRSRAVYTQ
201: HNNVIGTLNV LFAIKEFGEE CHLVKLGTMG EYGTPNIDIE EGYITITHNG RTDTLPYPKQ ASSFYHLSKV HDSHNIAFTC KAWGIRATDL NQGVVYGVKT
301: DETEMHEELR NRLDYDAVFG TALNRFCVQA AVGHPLTVYG KGGQTRGYLD IRDTVQCVEI AIANPAKAGE FRVFNQFTEQ FSVNELASLV TKAGSKLGLD
401: VKKMTVPNPR VEAEEHYYNA KHTKLMELGL EPHYLSDSLL DSLLNFAVQF KDRVDTKQIM PSVSWKKIGV KTKSMTT

Arabidopsis Description

SQD1UDP-sulfoquinovose synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48917]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.