Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12196 | Canola | cytosol | 46.23 | 73.13 |
| CDX80713 | Canola | cytosol | 43.4 | 68.66 |
| CDY27300 | Canola | cytosol | 56.6 | 58.82 |
| CDY09317 | Canola | cytosol | 87.74 | 40.97 |
| CDY19454 | Canola | plastid | 85.85 | 39.91 |
| CDX69556 | Canola | plastid | 89.62 | 34.42 |
| CDX70578 | Canola | cytosol | 88.68 | 34.06 |
| CDX78596 | Canola | cytosol | 87.74 | 33.7 |
| CDY09887 | Canola | plastid | 87.74 | 33.7 |
| AT5G14800.1 | Thale cress | cytosol | 84.91 | 32.61 |
| PGSC0003DMT400027071 | Potato | cytosol | 73.58 | 28.47 |
| VIT_08s0007g05600.t01 | Wine grape | cytosol, plastid | 72.64 | 27.9 |
| Solyc02g068640.2.1 | Tomato | plastid | 72.64 | 27.9 |
| KRH66795 | Soybean | plastid | 71.7 | 27.74 |
| KRG95119 | Soybean | nucleus | 71.7 | 27.74 |
| GSMUA_Achr11P... | Banana | plastid | 70.75 | 27.47 |
| Os01t0948400-01 | Rice | plasma membrane | 70.75 | 26.32 |
| EES04210 | Sorghum | plastid | 70.75 | 26.32 |
| HORVU3Hr1G106720.2 | Barley | mitochondrion, plastid | 70.75 | 26.13 |
| TraesCS3B01G538100.1 | Wheat | golgi | 70.75 | 26.13 |
| Zm00001d042117_P002 | Maize | plastid | 70.75 | 26.13 |
| TraesCS3D01G483400.1 | Wheat | golgi | 70.75 | 26.04 |
| CDY27299 | Canola | cytosol | 3.77 | 4.17 |
| TraesCS2B01G537900.1 | Wheat | plastid | 2.83 | 2.52 |
| KXG25246 | Sorghum | plastid | 0.0 | 0.0 |
| CDX98268 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX98267 | EnsemblPlantsGene:GSBRNA2T00105793001 | Gene3D:1.10.3730.10 | Gene3D:3.40.50.720 | GO:A0A078EB88 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0055114 | InterPro:6-PGluconate_DH-like_C_sf | InterPro:P5CR_dimer | KEGG:00330+1.5.1.2 | MetaCyc:PWY-3341 |
| MetaCyc:PWY-4981 | MetaCyc:PWY-6344 | PANTHER:PTHR11645 | PANTHER:PTHR11645:SF46 | PFAM:PF14748 | ProteinID:CDX98267 |
| ProteinID:CDX98267.1 | SUPFAM:SSF48179 | UniParc:UPI0004EDF189 | UniPathway:UPA00098 | MapMan:4.1.1.1.4.1.2 | : |
Description
BnaC06g16280D
Coordinates
chrLK031904:-:208478..209219
Molecular Weight (calculated)
10653.0 Da
IEP (calculated)
4.482
GRAVY (calculated)
0.452
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MPNTPAAIGE AASVMSLGTT AAEEDGALVA KLFGYVGKMF KADEKMFDAV TGLSGSGPAY IFLAIEALAD EGVAAGLPRE LALGLASQTV LGGATMVSKR
101: GSIRVC
101: GSIRVC
001: MEILPIPAES FKVGFIGAGK MAESIARGVV ASGVLPPNRI CTAVHSNLNR RDVFESFGVN VFSTSEEVVK ESDVVIFSVK PQVVKKAVTE LKSKLSKNKI
101: LVSVAAGIKL NDLQEWSGQD RFIRVMPNTP AAVGEAASVM SLGTGATEED GAIVAMLFGA VGKILKADEK MFDAVTGLSG SGPAYIFLAI EALADGGVAA
201: GLPRELALSL ASQTVLGAAT MVSKTGKHPG VLKDDVTSPG GTTIAGVHEL EKGSFRATLM NAVVAAAKRS RELSQS
101: LVSVAAGIKL NDLQEWSGQD RFIRVMPNTP AAVGEAASVM SLGTGATEED GAIVAMLFGA VGKILKADEK MFDAVTGLSG SGPAYIFLAI EALADGGVAA
201: GLPRELALSL ASQTVLGAAT MVSKTGKHPG VLKDDVTSPG GTTIAGVHEL EKGSFRATLM NAVVAAAKRS RELSQS
Arabidopsis Description
PROC1Pyrroline-5-carboxylate reductase [Source:UniProtKB/Swiss-Prot;Acc:P54904]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.