CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66795	Soybean	plastid	94.53	94.53
AT5G14800.1	Thale cress	cytosol	78.1	77.54
PGSC0003DMT400027071	Potato	cytosol	75.55	75.55
CDX69556	Canola	plastid	75.91	75.36
CDY09887	Canola	plastid	75.55	75.0
Solyc02g068640.2.1	Tomato	plastid	75.55	75.0
Bra008735.1-P	Field mustard	plastid	75.55	75.0
CDX78596	Canola	cytosol	74.82	74.28
CDX70578	Canola	cytosol	74.45	73.91
VIT_08s0007g05600.t01	Wine grape	cytosol, plastid	74.09	73.55
CDY09317	Canola	cytosol	59.49	71.81
CDX98267	Canola	cytosol	27.74	71.7
CDY19454	Canola	plastid	58.76	70.61
CDY27300	Canola	cytosol	26.28	70.59
GSMUA_Achr11P...	Banana	plastid	66.42	66.67
HORVU3Hr1G106720.2	Barley	mitochondrion, plastid	68.25	65.16
EES04210	Sorghum	plastid	67.52	64.91
Os01t0948400-01	Rice	plasma membrane	67.52	64.91
TraesCS3B01G538100.1	Wheat	golgi	67.52	64.46
Zm00001d042117_P002	Maize	plastid	67.52	64.46
TraesCS3D01G483400.1	Wheat	golgi	67.52	64.24
CDY12196	Canola	cytosol	15.33	62.69
CDY27299	Canola	cytosol	21.53	61.46
CDX80713	Canola	cytosol	14.23	58.21
CDX98268	Canola	plastid	16.06	55.7
Bra006270.1-P	Field mustard	cytosol	73.36	45.68
TraesCS2B01G537900.1	Wheat	plastid	14.6	33.61
KXG25246	Sorghum	plastid	11.31	28.18

Protein Annotations

KEGG:00330+1.5.1.2	Gene3D:1.10.3730.10	Gene3D:3.40.50.720	MapMan:4.1.1.1.4.1.2	InterPro:6-PGluconate_DH-like_C_sf	UniProt:A0A0R0ELE0
EMBL:ACUP02012082	EnsemblPlantsGene:GLYMA_19G131500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004735	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006561	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	GO:GO:0055129
EnsemblPlants:KRG95119	ProteinID:KRG95119	ProteinID:KRG95119.1	HAMAP:MF_01925	InterPro:NAD(P)-bd_dom_sf	InterPro:P5CR_dimer
InterPro:P5C_Rdtase_cat_N	PFAM:PF03807	PFAM:PF14748	PIRSF:PIRSF000193	ScanProsite:PS00521	PANTHER:PTHR11645
PANTHER:PTHR11645:SF0	MetaCyc:PWY-3341	MetaCyc:PWY-4981	MetaCyc:PWY-6344	InterPro:Pyrroline-COOH_reductase	SUPFAM:SSF48179
SUPFAM:SSF51735	TIGRFAMs:TIGR00112	UniParc:UPI0001CABEF7	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:-:39198947..39203187

Molecular Weight (calculated)

28564.4 Da

IEP (calculated)

8.852

GRAVY (calculated)

0.119

Length

274 amino acids

Sequence
(BLAST)

001: MEIFPIPAES YTLGFIGAGK MAESIARGAV RSGVLPPSRI RTAVHFNLAR RGAFESFGVT VLPSNDDVVR ESDVVVLSVK PQLVKDVVSK LTPLLTKNKL
101: LVSVAAGTKL KDLQEWAGND RFIRVMPNTP AAVGQAASVM SLGGSATEED GNIIAQLFGS IGKIWKAEEK YFDAITGLSG SGPAYVYLAI EALADGGVAA
201: GLPRDLSLSL ASQTVLGAAS MVSQTGKHPG QLKDDVTSPG GTTITGIHEL ENGGFRGTLM NAVVAAAKRS RELS

Best Arabidopsis Sequence Match ( AT5G14800.1 )
(BLAST)

001: MEILPIPAES FKVGFIGAGK MAESIARGVV ASGVLPPNRI CTAVHSNLNR RDVFESFGVN VFSTSEEVVK ESDVVIFSVK PQVVKKAVTE LKSKLSKNKI
101: LVSVAAGIKL NDLQEWSGQD RFIRVMPNTP AAVGEAASVM SLGTGATEED GAIVAMLFGA VGKILKADEK MFDAVTGLSG SGPAYIFLAI EALADGGVAA
201: GLPRELALSL ASQTVLGAAT MVSKTGKHPG VLKDDVTSPG GTTIAGVHEL EKGSFRATLM NAVVAAAKRS RELSQS

Arabidopsis Description

PROC1Pyrroline-5-carboxylate reductase [Source:UniProtKB/Swiss-Prot;Acc:P54904]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.