CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80713	Canola	cytosol	89.55	89.55
CDY27300	Canola	cytosol	74.63	49.02
CDX98267	Canola	cytosol	73.13	46.23
CDY09317	Canola	cytosol	73.13	21.59
CDY19454	Canola	plastid	73.13	21.49
CDX69556	Canola	plastid	76.12	18.48
CDX70578	Canola	cytosol	76.12	18.48
CDY09887	Canola	plastid	76.12	18.48
CDX78596	Canola	cytosol	74.63	18.12
PGSC0003DMT400027071	Potato	cytosol	71.64	17.52
Solyc02g068640.2.1	Tomato	plastid	71.64	17.39
AT5G14800.1	Thale cress	cytosol	71.64	17.39
GSMUA_Achr11P...	Banana	plastid	67.16	16.48
VIT_08s0007g05600.t01	Wine grape	cytosol, plastid	64.18	15.58
EES04210	Sorghum	plastid	65.67	15.44
Os01t0948400-01	Rice	plasma membrane	65.67	15.44
Zm00001d042117_P002	Maize	plastid	65.67	15.33
KRG95119	Soybean	nucleus	62.69	15.33
KRH66795	Soybean	plastid	62.69	15.33
HORVU3Hr1G106720.2	Barley	mitochondrion, plastid	64.18	14.98
TraesCS3B01G538100.1	Wheat	golgi	64.18	14.98
TraesCS3D01G483400.1	Wheat	golgi	64.18	14.93
TraesCS2B01G537900.1	Wheat	plastid	4.48	2.52
CDY27299	Canola	cytosol	2.99	2.08
KXG25246	Sorghum	plastid	0.0	0.0
CDX98268	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY12196	EnsemblPlantsGene:GSBRNA2T00061209001	Gene3D:1.10.3730.10	GO:A0A078FG32	GO:GO:0008150	GO:GO:0008152
GO:GO:0055114	InterPro:6-PGluconate_DH-like_C_sf	InterPro:P5CR_dimer	KEGG:00330+1.5.1.2	MetaCyc:PWY-3341	MetaCyc:PWY-4981
MetaCyc:PWY-6344	PANTHER:PTHR11645	PANTHER:PTHR11645:SF46	PFAM:PF14748	ProteinID:CDY12196	ProteinID:CDY12196.1
SUPFAM:SSF48179	UniParc:UPI0004EDDA7B	UniPathway:UPA00098	UniProt:A0A078FG32	MapMan:4.1.1.1.4.1.2	:

Description

BnaC04g12260DBnaC04g12260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FG32]

Coordinates

chrLK032018:+:317336..318773

Molecular Weight (calculated)

6911.7 Da

IEP (calculated)

4.074

GRAVY (calculated)

0.839

Length

67 amino acids

Sequence
(BLAST)

1: MFKADEKMFD AVTGLSGSGP AYIFLAVEAL ADGGVAAGLP RELALGLASQ MVQIIMSITQ LLIPMIG

Best Arabidopsis Sequence Match ( AT5G14800.2 )
(BLAST)

001: MEILPIPAES FKVGFIGAGK MAESIARGVV ASGVLPPNRI CTAVHSNLNR RDVFESFGVN VFSTSEEVVK ESDVVIFSVK PQVVKKAVTE LKSKLSKNKI
101: LVSVAAGIKL NDLQEWSGQD RFIRVMPNTP AAVGEAASVM SLGTGATEED GAIVAMLFGA VGKILKADEK MFDAVTGLSG SGPAYIFLAI EALADGGVAA
201: GLPRELALSL ASQTVSSWSC NDG

Arabidopsis Description

PROC1Pyrroline-5-carboxylate reductase [Source:UniProtKB/Swiss-Prot;Acc:P54904]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.