CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27299	Canola	cytosol	83.54	68.75
CDY09317	Canola	cytosol	82.28	28.63
CDY19454	Canola	plastid	81.01	28.07
CDX69556	Canola	plastid	82.28	23.55
CDY09887	Canola	plastid	82.28	23.55
AT5G14800.1	Thale cress	cytosol	74.68	21.38
CDX78596	Canola	cytosol	60.76	17.39
CDX70578	Canola	cytosol	59.49	17.03
KRG95119	Soybean	nucleus	55.7	16.06
KRH66795	Soybean	plastid	54.43	15.69
PGSC0003DMT400027071	Potato	cytosol	50.63	14.6
Solyc02g068640.2.1	Tomato	plastid	46.84	13.41
VIT_08s0007g05600.t01	Wine grape	cytosol, plastid	44.3	12.68
GSMUA_Achr11P...	Banana	plastid	39.24	11.36
HORVU3Hr1G106720.2	Barley	mitochondrion, plastid	35.44	9.76
EES04210	Sorghum	plastid	32.91	9.12
TraesCS3B01G538100.1	Wheat	golgi	32.91	9.06
Zm00001d042117_P002	Maize	plastid	32.91	9.06
TraesCS3D01G483400.1	Wheat	golgi	32.91	9.03
Os01t0948400-01	Rice	plasma membrane	30.38	8.42
TraesCS2B01G537900.1	Wheat	plastid	8.86	5.88
KXG25246	Sorghum	plastid	6.33	4.55
CDY27300	Canola	cytosol	0.0	0.0
CDY12196	Canola	cytosol	0.0	0.0
CDX98267	Canola	cytosol	0.0	0.0
CDX80713	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX98268	EnsemblPlantsGene:GSBRNA2T00105795001	Gene3D:3.40.50.720	InterPro:P5C_Rdtase_cat_N	PFAM:PF03807	ProteinID:CDX98268
ProteinID:CDX98268.1	SEG:seg	UniParc:UPI0004EBAE6E	MapMan:35.1	:	:

Description

BnaC06g16290D

Coordinates

chrLK031904:-:217334..217573

Molecular Weight (calculated)

8542.2 Da

IEP (calculated)

7.546

GRAVY (calculated)

0.043

Length

79 amino acids

Sequence
(BLAST)

1: METLPISAES FKVRFIGAGK MAESIARGVV ASGMLPPNRN STAVHSNLNR RQVFEFFGVN VFSSSEEISG SSSLYLSLE

Best Arabidopsis Sequence Match ( AT5G14800.2 )
(BLAST)

001: MEILPIPAES FKVGFIGAGK MAESIARGVV ASGVLPPNRI CTAVHSNLNR RDVFESFGVN VFSTSEEVVK ESDVVIFSVK PQVVKKAVTE LKSKLSKNKI
101: LVSVAAGIKL NDLQEWSGQD RFIRVMPNTP AAVGEAASVM SLGTGATEED GAIVAMLFGA VGKILKADEK MFDAVTGLSG SGPAYIFLAI EALADGGVAA
201: GLPRELALSL ASQTVSSWSC NDG

Arabidopsis Description

PROC1Pyrroline-5-carboxylate reductase [Source:UniProtKB/Swiss-Prot;Acc:P54904]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.