CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12196	Canola	cytosol	49.02	74.63
CDX80713	Canola	cytosol	46.08	70.15
CDX98267	Canola	cytosol	58.82	56.6
CDY09317	Canola	cytosol	94.12	42.29
CDY19454	Canola	plastid	92.16	41.23
CDX69556	Canola	plastid	87.25	32.25
CDX70578	Canola	cytosol	87.25	32.25
CDY09887	Canola	plastid	87.25	32.25
Bra008735.1-P	Field mustard	plastid	87.25	32.25
CDX78596	Canola	cytosol	86.27	31.88
PGSC0003DMT400027071	Potato	cytosol	75.49	28.1
GSMUA_Achr11P...	Banana	plastid	73.53	27.47
Solyc02g068640.2.1	Tomato	plastid	73.53	27.17
HORVU3Hr1G106720.2	Barley	mitochondrion, plastid	75.49	26.83
TraesCS3B01G538100.1	Wheat	golgi	75.49	26.83
TraesCS3D01G483400.1	Wheat	golgi	75.49	26.74
EES04210	Sorghum	plastid	73.53	26.32
KRG95119	Soybean	nucleus	70.59	26.28
Zm00001d042117_P002	Maize	plastid	73.53	26.13
VIT_08s0007g05600.t01	Wine grape	cytosol, plastid	70.59	26.09
Os01t0948400-01	Rice	plasma membrane	72.55	25.96
KRH66795	Soybean	plastid	69.61	25.91
TraesCS2B01G537900.1	Wheat	plastid	2.94	2.52
CDY27299	Canola	cytosol	1.96	2.08
KXG25246	Sorghum	plastid	0.0	0.0
CDX98268	Canola	plastid	0.0	0.0

Protein Annotations

KEGG:00330+1.5.1.2	Gene3D:1.10.3730.10	MapMan:4.1.1.1.4.1.2	InterPro:6-PGluconate_DH-like_C_sf	GO:A0A078GL29	UniProt:A0A078GL29
EnsemblPlants:CDY27300	ProteinID:CDY27300	ProteinID:CDY27300.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004735
GO:GO:0006561	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00037220001	InterPro:P5CR_dimer	PFAM:PF14748	ScanProsite:PS00521	PANTHER:PTHR11645	PANTHER:PTHR11645:SF46
MetaCyc:PWY-3341	MetaCyc:PWY-4981	MetaCyc:PWY-6344	InterPro:Pyrroline-COOH_reductase	SUPFAM:SSF48179	UniPathway:UPA00098
UniParc:UPI0004EDCC23	:	:	:	:	:

Description

BnaC04g18800DBnaC04g18800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL29]

Coordinates

chrLK032202:+:466584..467087

Molecular Weight (calculated)

10221.1 Da

IEP (calculated)

4.461

GRAVY (calculated)

0.031

Length

102 amino acids

Sequence
(BLAST)

001: MFKADEKMFD AVTGLSTGSG PAYIFLAIEA LADGGVAAGL PQELALGLAS QTVLGGATMV SKTGKHPGVL KDDVTSPGGT TIAGVHELEK GSWSCNNGEQ
101: NG

Best Arabidopsis Sequence Match ( AT5G14800.1 )
(BLAST)

001: MEILPIPAES FKVGFIGAGK MAESIARGVV ASGVLPPNRI CTAVHSNLNR RDVFESFGVN VFSTSEEVVK ESDVVIFSVK PQVVKKAVTE LKSKLSKNKI
101: LVSVAAGIKL NDLQEWSGQD RFIRVMPNTP AAVGEAASVM SLGTGATEED GAIVAMLFGA VGKILKADEK MFDAVTGLSG SGPAYIFLAI EALADGGVAA
201: GLPRELALSL ASQTVLGAAT MVSKTGKHPG VLKDDVTSPG GTTIAGVHEL EKGSFRATLM NAVVAAAKRS RELSQS

Arabidopsis Description

PROC1Pyrroline-5-carboxylate reductase [Source:UniProtKB/Swiss-Prot;Acc:P54904]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.