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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 7
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • peroxisome 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:mitochondrion, peroxisome, plastid, secretory
BaCelLo:secretory
EpiLoc:peroxisome
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d028258_P001 Maize endoplasmic reticulum 92.49 92.49
EER95239 Sorghum endoplasmic reticulum 89.02 89.19
EER95246 Sorghum cytosol 75.53 85.4
TraesCS4A01G063900.1 Wheat endoplasmic reticulum 77.07 76.92
TraesCS4A01G064000.1 Wheat endoplasmic reticulum 77.07 76.78
TraesCS4D01G240900.1 Wheat endoplasmic reticulum 77.26 76.53
TraesCS4B01G241100.1 Wheat endoplasmic reticulum 76.88 76.29
HORVU4Hr1G066880.1 Barley endoplasmic reticulum 76.88 76.29
TraesCS4D01G240800.1 Wheat endoplasmic reticulum, golgi 75.72 74.43
HORVU4Hr1G066870.1 Barley endoplasmic reticulum 75.92 74.34
Os03t0223100-02 Rice endoplasmic reticulum, golgi 77.26 74.26
TraesCS4B01G241300.1 Wheat endoplasmic reticulum, golgi 52.22 73.44
TraesCS2D01G589200.1 Wheat endoplasmic reticulum 72.83 72.69
TraesCS2A01G577800.1 Wheat endoplasmic reticulum 72.06 72.34
HORVU2Hr1G124430.1 Barley endoplasmic reticulum 71.48 71.35
KRH66690 Soybean endoplasmic reticulum 51.83 54.67
Solyc10g078280.2.1 Tomato endoplasmic reticulum, golgi 50.1 52.74
Bra003246.1-P Field mustard cytosol 42.97 52.72
VIT_08s0040g00820.t01 Wine grape endoplasmic reticulum 50.29 52.2
PGSC0003DMT400018545 Potato endoplasmic reticulum 49.52 51.71
EES15562 Sorghum endoplasmic reticulum, golgi 53.37 50.64
EES18245 Sorghum endoplasmic reticulum, golgi 49.71 50.19
AT3G56630.1 Thale cress endoplasmic reticulum 48.17 50.1
CDY32022 Canola endoplasmic reticulum 48.17 50.1
CDX72120 Canola endoplasmic reticulum 47.21 49.49
Bra007259.1-P Field mustard endoplasmic reticulum 47.01 49.49
CDX67652 Canola endoplasmic reticulum 47.59 49.4
CDY32023 Canola endoplasmic reticulum 47.59 49.4
CDX67653 Canola endoplasmic reticulum 47.21 49.0
AT1G34540.1 Thale cress endoplasmic reticulum 46.82 48.8
CDY56777 Canola endoplasmic reticulum, extracellular 46.44 48.79
OQU75917 Sorghum mitochondrion 44.51 48.43
Bra003247.1-P Field mustard endoplasmic reticulum 45.66 47.4
EES04227 Sorghum endoplasmic reticulum, extracellular 44.32 42.67
KXG28317 Sorghum endoplasmic reticulum 41.62 41.3
OQU85673 Sorghum cytosol 38.34 40.28
EES07097 Sorghum golgi 40.85 39.55
EES18148 Sorghum endoplasmic reticulum, extracellular 39.88 39.5
EES03915 Sorghum plastid 40.27 39.43
EES12648 Sorghum endoplasmic reticulum 40.66 39.22
EES16641 Sorghum endoplasmic reticulum 38.34 39.1
OQU82886 Sorghum endoplasmic reticulum, plasma membrane 38.15 38.9
OQU87885 Sorghum plastid 40.85 38.76
EES19608 Sorghum plastid 39.88 38.69
KXG38289 Sorghum plastid 38.92 36.86
Protein Annotations
Gene3D:1.10.630.10MapMan:50.1.13EntrezGene:8085277UniProt:C5WSN1InterPro:Cyt_P450InterPro:Cyt_P450_CS
InterPro:Cyt_P450_E_grp-IInterPro:Cyt_P450_sfEnsemblPlants:EER92623ProteinID:EER92623ProteinID:EER92623.1GO:GO:0003674
GO:GO:0003824GO:GO:0004497GO:GO:0005488GO:GO:0005506GO:GO:0008150GO:GO:0008152
GO:GO:0016491GO:GO:0016705GO:GO:0020037GO:GO:0046872GO:GO:0055114InterPro:IPR036396
PFAM:PF00067PRINTS:PR00385PRINTS:PR00463ScanProsite:PS00086PANTHER:PTHR24296PANTHER:PTHR24296:SF77
EnsemblPlantsGene:SORBI_3001G451700SUPFAM:SSF48264unigene:Sbi.1025SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001A82803
RefSeq:XP_002465625.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr1:+:72846862..72848880
Molecular Weight (calculated)
58717.2 Da
IEP (calculated)
8.569
GRAVY (calculated)
-0.246
Length
519 amino acids
Sequence
(BLAST)
001: MAAFWLLLLF VASAVLVLRT WRARSIISKA RQAGPTYPPG LEPYPLIGHL PQFLANRHRV LDWMTEFLER QTTCTFVLRR PGGVRGAITA NPANVEHFLR
101: TSFDRYPKGP RFSLLLNDFL GRGIFNADGE AWRAQRKVAS HEFNTRSLRA FVARCVHTEL HGRLLPLLRR AAASGSPLDL QDALERFAFD NICRVAFDHD
201: PCQLPDDGDA GADSSFADAF RDAENLSAGR FRYALPGFWK IKKALNVGSE KRLRESIAMV HDFADRIIQS RREEMLTAGF DKHDLLSRFM ASQDETYSES
301: EVPLRDVVIS FLLAGRETTS SALTWFFWLL SSRPDLQRRI RDEVAAVRAR RRAQGDVDSI VGFDLDELRE MHYVHAAITE SMRLYPPVPI NSLRAETDDV
401: LPDGTAVQAG WFVAYNSYAM GRMKSVWGDD AREYRPERWL NTGDGTFRPD SPFRFVAFHA GPRLCLGKEM AYIQMKSIVA CVLEELDVAV DGAHQPRPVA
501: SLTLRMADGL PVTVKPRRD
Best Arabidopsis Sequence Match ( AT3G56630.1 )
(BLAST)
001: MEHFILISLL CFPIVIFFIF FPKNSSSEFG FKSYPIVGSL PGLVNNRHRF LDWTVETLSR CPTQTAIFRR PGKLQFVMTA NPANVEYMLK TKFESFPKGE
101: RFISILEDFL GRGIFNSDGE MWWKQRKTAS YEFSTKSLRD FVMSNVTVEI NTRLVPVLAE AATNGKLIDL QDILERFAFD NICKLAFNVD SACLGDDGAA
201: GVNFMQAFET AATIISQRFQ SVISYSWKIK KKLNIGSERV LRESIMIVHK FADEIVRNRI EQGKVSDHKE DLLSRFISKE EMNSPEILRD IVISFILAGR
301: DTTSSALSWF FWLLSMHPEV KDKILQELNS IRERTGKRIG EVYGFEDLKL MNYLHAAITE SLRLYPPVPV DTMSCAEDNV LPDGTFIGKD WGISYNAYAM
401: GRMESIWGKD CDRFDPERWI DETNGGFRGE NPYKFPAFHA GPRMCLGKEM AYIQMKSIVA AVLERFVVEV PGKKERPEIL MSVTLRIRGG LNVRVQERS
Arabidopsis Description
CYP94D2CYP94D2 [Source:UniProtKB/TrEMBL;Acc:A0A178V9L2]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.