CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
plasma membrane 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12559
EES14570
KXG31128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77610.1	EES12559	AT3G60600.1	21798944
AT1G77610.1	EES14570	AT3G60600.1	21798944
AT1G77610.1	KXG31128	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002941_P001	Maize	plasma membrane	95.38	95.93
TraesCS2B01G620900.1	Wheat	plasma membrane	89.6	90.64
TraesCS2D01G571200.1	Wheat	plasma membrane	89.6	90.64
HORVU2Hr1G126950.1	Barley	plasma membrane	89.31	90.09
HORVU2Hr1G127060.1	Barley	plasma membrane	89.31	90.09
TraesCS2A01G559300.1	Wheat	plasma membrane	89.02	90.06
Os04t0692000-02	Rice	plasma membrane	90.17	89.14
HORVU4Hr1G034790.1	Barley	plasma membrane	57.51	88.84
HORVU5Hr1G016290.1	Barley	plasma membrane	63.01	86.51
HORVU6Hr1G084900.3	Barley	plasma membrane	63.58	85.94
Bra003677.1-P	Field mustard	plasma membrane	82.37	84.82
CDX87511	Canola	plasma membrane	82.08	84.27
CDX79213	Canola	plasma membrane	81.79	84.23
Bra015662.1-P	Field mustard	plasma membrane	81.79	83.98
CDX88379	Canola	plasma membrane	81.79	83.98
CDX68051	Canola	plasma membrane	81.5	83.93
AT1G77610.1	Thale cress	plasma membrane	81.21	83.63
EES13196	Sorghum	plasma membrane	81.21	81.92
CDY38825	Canola	plasma membrane	80.92	81.87
GSMUA_Achr3P22140_001	Banana	plasma membrane	80.64	81.82
VIT_18s0001g02970.t01	Wine grape	plasma membrane	80.35	81.76
CDX96572	Canola	plasma membrane	80.35	81.29
Bra016403.1-P	Field mustard	plasma membrane	80.35	81.05
GSMUA_Achr6P18770_001	Banana	plasma membrane	79.77	80.94
PGSC0003DMT400045308	Potato	plasma membrane	79.19	80.59
Solyc06g060370.2.1	Tomato	plasma membrane	78.9	80.29
AT1G21870.1	Thale cress	plasma membrane	78.9	80.06
KRH16322	Soybean	plasma membrane	78.9	79.82
KRH64681	Soybean	plasma membrane	78.9	79.13
KRH53233	Soybean	plasma membrane	78.9	79.13
KRH18757	Soybean	plasma membrane	78.03	78.95
HORVU6Hr1G047820.1	Barley	mitochondrion	48.84	77.17
Solyc11g012880.1.1	Tomato	plasma membrane	73.7	75.67
CDY25067	Canola	peroxisome, plasma membrane, plastid	33.81	68.42
CDY38193	Canola	peroxisome, plasma membrane, plastid	33.81	68.42
CDY63382	Canola	peroxisome, plasma membrane, plastid	33.81	68.42
CDY70208	Canola	peroxisome, plasma membrane, plastid	33.81	68.42
HORVU2Hr1G117120.7	Barley	extracellular, plasma membrane	34.39	67.23
HORVU3Hr1G095930.3	Barley	mitochondrion	56.94	58.46
CDX79216	Canola	endoplasmic reticulum, extracellular, vacuole	27.75	50.26
CDX79220	Canola	mitochondrion	46.53	33.2
EER99970	Sorghum	golgi, plasma membrane, plastid	29.77	32.49
KXG39624	Sorghum	plastid	30.06	32.0
EES18936	Sorghum	cytosol, endoplasmic reticulum, peroxisome, plastid	28.32	29.25
EER93603	Sorghum	plasma membrane	25.14	23.02
KXG22255	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	20.81	20.17
EES14504	Sorghum	golgi, peroxisome, plasma membrane	21.1	20.11
KXG33567	Sorghum	cytosol, golgi, plasma membrane	20.52	19.67
EES16534	Sorghum	endoplasmic reticulum, plasma membrane, plastid, vacuole	21.39	19.27
KXG33369	Sorghum	cytosol, peroxisome, plasma membrane	19.08	14.1
KXG19328	Sorghum	peroxisome	17.63	14.02

Protein Annotations

EnsemblPlants:EES13163	EnsemblPlantsGene:SORBI_3006G280500	EntrezGene:8076524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Sugar_P_trans_dom	PANTHER:PTHR44674	PANTHER:PTHR44674:SF2	PFAM:PF03151	ProteinID:EES13163	ProteinID:EES13163.1
RefSeq:XP_002448835.1	SEG:seg	SUPFAM:SSF103481	TMHMM:TMhelix	unigene:Sbi.12511	UniParc:UPI0001A8767C
UniProt:C5YB51	MapMan:24.2.1.1.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:61062571..61064995

Molecular Weight (calculated)

38203.5 Da

IEP (calculated)

9.060

GRAVY (calculated)

0.688

Length

346 amino acids

Sequence
(BLAST)

001: MEDGGKAPAS LGTLRAVLAI LQWWGFNVTV IIMNKWIFQK LDFKFPLTVS CVHFICSSIG AYIAIHVLKA KPLIQVEPED RWKRIFPMSF VFCINIVLGN
101: VSLRYIPVSF MQTIKSFTPA TTVILQWLVW NKHFEWRIWA SLVPIVGGIL LTSVTELSFN IFGFCAAMVG CLATSTKTIL AESLLHGYKF DSINTVYYMA
201: PFATMILALP AMLLEGGGVI NWFYTHDSIV SALIIILGSG VLAFCLNFSI FYVIHSTTAV TFNVAGNLKV AVAVLVSWLI FRNPISAMNA IGCGITLVGC
301: TFYGYVRHLI SQRQAAAPGS PGTAPANLSR NQMEMLPLVD NKQEKV

Best Arabidopsis Sequence Match ( AT1G77610.1 )
(BLAST)

001: MEEGSMFRSL LAILQWWGFN VTVIIMNKWI FQKLDFKFPL SVSCVHFICS SIGAYIVIKV LKLKPLIVVD PEDRWRRIFP MSFVFCINIV LGNVSLRYIP
101: VSFMQTIKSF TPATTVVLQW LVWRKYFDWR IWASLVPIVG GILLTSVTEL SFNMFGFCAA LFGCLATSTK TILAESLLHG YKFDSINTVY YMAPFATMIL
201: GIPALLLEGS GILSWFEAHP APWSALIIIL SSGVLAFCLN FSIFYVIHST TAVTFNVAGN LKVAVAVMVS WLIFRNPISY MNAVGCGITL VGCTFYGYVR
301: HMLSQQTPGT PRTPRTPRSK MELLPLVNND KLEGKV

Arabidopsis Description

UDP-GALT1UDP-galactose transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C521]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.