Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- golgi 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G091830.4 | |
| HORVU6Hr1G060760.3 | |
| HORVU7Hr1G071270.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G77610.1 | HORVU2Hr1G091830.4 | AT3G60600.1 | 21798944 |
| AT1G77610.1 | HORVU6Hr1G060760.3 | AT3G60600.1 | 21798944 |
| AT1G77610.1 | HORVU7Hr1G071270.2 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G034790.1 | Barley | plasma membrane | 52.51 | 51.34 |
| TraesCS2B01G620900.1 | Wheat | plasma membrane | 79.91 | 51.17 |
| HORVU2Hr1G126950.1 | Barley | plasma membrane | 79.91 | 51.02 |
| HORVU2Hr1G127060.1 | Barley | plasma membrane | 79.91 | 51.02 |
| TraesCS2D01G571200.1 | Wheat | plasma membrane | 79.45 | 50.88 |
| TraesCS2A01G559300.1 | Wheat | plasma membrane | 79.45 | 50.88 |
| Zm00001d002941_P001 | Maize | plasma membrane | 77.17 | 49.13 |
| EES13163 | Sorghum | plasma membrane | 77.17 | 48.84 |
| HORVU2Hr1G117120.7 | Barley | extracellular, plasma membrane | 39.27 | 48.59 |
| Os04t0692000-02 | Rice | plasma membrane | 75.8 | 47.43 |
| HORVU5Hr1G016290.1 | Barley | plasma membrane | 52.97 | 46.03 |
| VIT_18s0001g02970.t01 | Wine grape | plasma membrane | 71.23 | 45.88 |
| HORVU6Hr1G084900.3 | Barley | plasma membrane | 53.42 | 45.7 |
| CDX88379 | Canola | plasma membrane | 70.32 | 45.7 |
| Solyc06g060370.2.1 | Tomato | plasma membrane | 70.78 | 45.59 |
| PGSC0003DMT400045308 | Potato | plasma membrane | 70.78 | 45.59 |
| CDX68051 | Canola | plasma membrane | 69.86 | 45.54 |
| Bra003677.1-P | Field mustard | plasma membrane | 69.86 | 45.54 |
| CDX87511 | Canola | plasma membrane | 69.86 | 45.4 |
| Bra015662.1-P | Field mustard | plasma membrane | 69.86 | 45.4 |
| AT1G77610.1 | Thale cress | plasma membrane | 69.41 | 45.24 |
| CDX79213 | Canola | plasma membrane | 69.41 | 45.24 |
| GSMUA_Achr3P22140_001 | Banana | plasma membrane | 70.32 | 45.16 |
| CDY38825 | Canola | plasma membrane | 69.86 | 44.74 |
| CDX96572 | Canola | plasma membrane | 69.86 | 44.74 |
| KRH64681 | Soybean | plasma membrane | 70.32 | 44.64 |
| KRH53233 | Soybean | plasma membrane | 70.32 | 44.64 |
| Bra016403.1-P | Field mustard | plasma membrane | 69.86 | 44.61 |
| KRH18757 | Soybean | plasma membrane | 69.41 | 44.44 |
| KRH16322 | Soybean | plasma membrane | 69.41 | 44.44 |
| AT1G21870.1 | Thale cress | plasma membrane | 68.95 | 44.28 |
| GSMUA_Achr6P18770_001 | Banana | plasma membrane | 68.95 | 44.28 |
| Solyc11g012880.1.1 | Tomato | plasma membrane | 68.04 | 44.21 |
| HORVU7Hr1G077640.13 | Barley | endoplasmic reticulum, mitochondrion, plasma membrane | 70.78 | 43.18 |
| HORVU3Hr1G095930.3 | Barley | mitochondrion | 41.55 | 27.0 |
| CDY63382 | Canola | peroxisome, plasma membrane, plastid | 20.55 | 26.32 |
| CDY70208 | Canola | peroxisome, plasma membrane, plastid | 20.55 | 26.32 |
| CDY25067 | Canola | peroxisome, plasma membrane, plastid | 20.55 | 26.32 |
| CDY38193 | Canola | peroxisome, plasma membrane, plastid | 20.55 | 26.32 |
| CDX79220 | Canola | mitochondrion | 50.68 | 22.89 |
| HORVU4Hr1G057100.4 | Barley | endoplasmic reticulum, plasma membrane, plastid | 28.31 | 18.96 |
| HORVU1Hr1G011890.1 | Barley | endoplasmic reticulum, peroxisome, plasma membrane | 24.2 | 15.96 |
| HORVU5Hr1G044230.1 | Barley | mitochondrion, peroxisome, plasma membrane, plastid | 19.18 | 10.99 |
| HORVU5Hr1G019670.3 | Barley | plasma membrane | 14.61 | 10.92 |
| HORVU7Hr1G073550.1 | Barley | plastid | 19.63 | 10.62 |
| HORVU4Hr1G006510.1 | Barley | plastid | 21.0 | 10.22 |
| HORVU1Hr1G067910.1 | Barley | golgi, peroxisome, plastid | 18.26 | 9.69 |
| HORVU3Hr1G078650.1 | Barley | cytosol, peroxisome, plastid | 17.35 | 8.54 |
| HORVU3Hr1G071660.6 | Barley | cytosol, peroxisome, plasma membrane | 16.44 | 7.76 |
| HORVU7Hr1G022910.1 | Barley | plastid | 15.07 | 6.89 |
| CDX79216 | Canola | endoplasmic reticulum, extracellular, vacuole | 5.94 | 6.81 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G047820.1 | EnsemblPlantsGene:HORVU6Hr1G047820 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Sugar_P_trans_dom |
| PANTHER:PTHR44674 | PANTHER:PTHR44674:SF2 | PFAM:PF03151 | SEG:seg | SUPFAM:SSF103481 | TMHMM:TMhelix |
| UniParc:UPI000B46FBDA | UniProt:A0A287U478 | MapMan:24.2.1.1.2 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:286901016..286902875
Molecular Weight (calculated)
24855.9 Da
IEP (calculated)
10.237
GRAVY (calculated)
0.368
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: GVGRRRRRAG QHAHGARHPP VVGLERHHHH HQKWIFQKLD FKFPQTVSYV HFICSAIGAY VAIHVLKAKL LIQVEPEDRW KRIFPMSFVF CMNIVLGNVS
101: LRYIPVSVMQ TIKSFTPATT IILQWLVWSK HFEWRIWASL VPIVGGILLT AMIEHSFNIF GFCAAMIGCL ATPTKTILAE SLLHGYKFDS INTVFYMAPF
201: ATMILALPAM FLEGGGTID
101: LRYIPVSVMQ TIKSFTPATT IILQWLVWSK HFEWRIWASL VPIVGGILLT AMIEHSFNIF GFCAAMIGCL ATPTKTILAE SLLHGYKFDS INTVFYMAPF
201: ATMILALPAM FLEGGGTID
001: MEEGSLWRQW TMFRSLLSIL QWWGFNVTVI IMNKWIFQKL DFKFPLSVSC VHFICSSIGA YIVIKVLKLK PLIVVDPEDR WRRIFPMSFV FCINIVLGNI
101: SLRYIPVSFM QTIKSLTPAT TVVLQWLVWR KYFDWRIWAS LVPIVGGILL TSITELSFNV FGFCAALFGC LATSTKTILA ESLLHGYKFD SINTVYYMAP
201: FATMILGLPA FLLERNGILD WFEAHPSPWS ALIILFNSGV LAFCLNFSIF YVIQSTTAVT FNVAGNLKVA VAVFVSWMIF RNPISPMNAV GCGITLVGCT
301: FYGYVRHMLS QQQPGTPRTP RTPRNKMELI PLVNDKLESK I
101: SLRYIPVSFM QTIKSLTPAT TVVLQWLVWR KYFDWRIWAS LVPIVGGILL TSITELSFNV FGFCAALFGC LATSTKTILA ESLLHGYKFD SINTVYYMAP
201: FATMILGLPA FLLERNGILD WFEAHPSPWS ALIILFNSGV LAFCLNFSIF YVIQSTTAVT FNVAGNLKVA VAVFVSWMIF RNPISPMNAV GCGITLVGCT
301: FYGYVRHMLS QQQPGTPRTP RTPRNKMELI PLVNDKLESK I
Arabidopsis Description
GONST5GDP-mannose transporter GONST5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFE9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.