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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • mitochondrion 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, plasma membrane
iPSORT:mitochondrion
MultiLoc:plasma membrane
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU2Hr1G091830.4
HORVU6Hr1G060760.3
HORVU7Hr1G071270.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G77610.1 HORVU2Hr1G091830.4 AT3G60600.1 21798944
AT1G77610.1 HORVU6Hr1G060760.3 AT3G60600.1 21798944
AT1G77610.1 HORVU7Hr1G071270.2 AT3G60600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU2Hr1G126950.1 Barley plasma membrane 100.0 100.0
TraesCS2B01G620900.1 Wheat plasma membrane 99.13 99.42
TraesCS2D01G571200.1 Wheat plasma membrane 98.54 98.83
TraesCS2A01G559300.1 Wheat plasma membrane 98.54 98.83
HORVU6Hr1G084900.3 Barley plasma membrane 70.85 94.92
HORVU5Hr1G016290.1 Barley plasma membrane 68.8 93.65
HORVU4Hr1G034790.1 Barley plasma membrane 60.93 93.3
Os04t0692000-02 Rice plasma membrane 91.55 89.71
EES13163 Sorghum plasma membrane 90.09 89.31
Zm00001d002941_P001 Maize plasma membrane 88.63 88.37
Bra003677.1-P Field mustard plasma membrane 80.47 82.14
CDX88379 Canola plasma membrane 80.47 81.9
CDX79213 Canola plasma membrane 80.17 81.85
CDX87511 Canola plasma membrane 80.17 81.6
AT1G77610.1 Thale cress plasma membrane 79.88 81.55
CDX68051 Canola plasma membrane 79.88 81.55
Bra015662.1-P Field mustard plasma membrane 79.88 81.31
VIT_18s0001g02970.t01 Wine grape plasma membrane 80.17 80.88
GSMUA_Achr3P22140_001 Banana plasma membrane 79.59 80.06
PGSC0003DMT400045308 Potato plasma membrane 79.3 80.0
HORVU6Hr1G047820.1 Barley mitochondrion 51.02 79.91
CDY38825 Canola plasma membrane 79.59 79.82
Solyc06g060370.2.1 Tomato plasma membrane 79.01 79.71
KRH16322 Soybean plasma membrane 79.3 79.53
CDX96572 Canola plasma membrane 79.3 79.53
GSMUA_Achr6P18770_001 Banana plasma membrane 79.01 79.47
Bra016403.1-P Field mustard plasma membrane 79.3 79.3
KRH18757 Soybean plasma membrane 79.01 79.24
KRH53233 Soybean plasma membrane 79.01 78.55
AT1G21870.1 Thale cress plasma membrane 77.84 78.3
HORVU7Hr1G077640.13 Barley endoplasmic reticulum, mitochondrion, plasma membrane 81.92 78.27
KRH64681 Soybean plasma membrane 78.72 78.26
Solyc11g012880.1.1 Tomato plasma membrane 73.76 75.07
HORVU2Hr1G117120.7 Barley extracellular, plasma membrane 35.57 68.93
CDY63382 Canola peroxisome, plasma membrane, plastid 33.53 67.25
CDY25067 Canola peroxisome, plasma membrane, plastid 33.53 67.25
CDY70208 Canola peroxisome, plasma membrane, plastid 33.53 67.25
CDY38193 Canola peroxisome, plasma membrane, plastid 33.53 67.25
HORVU3Hr1G095930.3 Barley mitochondrion 61.81 62.91
CDX79216 Canola endoplasmic reticulum, extracellular, vacuole 26.82 48.17
CDX79220 Canola mitochondrion 46.06 32.58
HORVU4Hr1G057100.4 Barley endoplasmic reticulum, plasma membrane, plastid 30.32 31.8
HORVU1Hr1G011890.1 Barley endoplasmic reticulum, peroxisome, plasma membrane 27.11 28.01
HORVU5Hr1G019670.3 Barley plasma membrane 20.41 23.89
HORVU4Hr1G006510.1 Barley plastid 26.24 20.0
HORVU5Hr1G044230.1 Barley mitochondrion, peroxisome, plasma membrane, plastid 20.41 18.32
HORVU7Hr1G073550.1 Barley plastid 21.28 18.02
HORVU1Hr1G067910.1 Barley golgi, peroxisome, plastid 20.7 17.19
HORVU3Hr1G078650.1 Barley cytosol, peroxisome, plastid 20.41 15.73
HORVU3Hr1G071660.6 Barley cytosol, peroxisome, plasma membrane 18.66 13.79
HORVU7Hr1G022910.1 Barley plastid 15.74 11.27
Protein Annotations
EMBL:AK358695EnsemblPlants:HORVU2Hr1G127060.1EnsemblPlantsGene:HORVU2Hr1G127060GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Sugar_P_trans_domPANTHER:PTHR44674PANTHER:PTHR44674:SF2PFAM:PF03151SEG:segSUPFAM:SSF103481
TMHMM:TMhelixUniParc:UPI0002005439UniProt:F2D486MapMan:24.2.1.1.2::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D486]
Coordinates
chrchr2H:+:765749699..765752266
Molecular Weight (calculated)
37823.0 Da
IEP (calculated)
8.888
GRAVY (calculated)
0.698
Length
343 amino acids
Sequence
(BLAST)
001: MESAGGGGGL GSMRAVLAIL QWWGFNVTVI IINKWIFQKL DFKFPLTVSC VHFICSSIGA YVAIHVLKAK PLIQVEPEDR WKRIFPMSFV FCMNIVLGNV
101: SLRYIPVSFM QTIKSFTPAT TVILQWLVWS KHFEWRIWAS LVPIVGGILL TSMTELSFNI FGFCAAMIGC LATSTKTILA ESLLHGYKFD SINTVYYMAP
201: FATMILALPA MLLEGGGVID WFYTHDSVFS SLIIILGSGV LAFCLNFSIF YVIHSTTAVT FNVAGNLKVA VAVLVSWLIF RNPISPMNAI GCAITLVGCT
301: FYGYVRHLIS QQKAAAPLGS QGTNSPRSRV EMLPLVGDKE DKV
Best Arabidopsis Sequence Match ( AT1G21870.1 )
(BLAST)
001: MEEGSLWRQW TMFRSLLSIL QWWGFNVTVI IMNKWIFQKL DFKFPLSVSC VHFICSSIGA YIVIKVLKLK PLIVVDPEDR WRRIFPMSFV FCINIVLGNI
101: SLRYIPVSFM QTIKSLTPAT TVVLQWLVWR KYFDWRIWAS LVPIVGGILL TSITELSFNV FGFCAALFGC LATSTKTILA ESLLHGYKFD SINTVYYMAP
201: FATMILGLPA FLLERNGILD WFEAHPSPWS ALIILFNSGV LAFCLNFSIF YVIQSTTAVT FNVAGNLKVA VAVFVSWMIF RNPISPMNAV GCGITLVGCT
301: FYGYVRHMLS QQQPGTPRTP RTPRNKMELI PLVNDKLESK I
Arabidopsis Description
GONST5GDP-mannose transporter GONST5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFE9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.