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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • golgi 6
  • extracellular 7
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:golgi
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:extracellular, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d041880_P001 Maize extracellular, plasma membrane 92.96 93.46
Os12t0429200-01 Rice plasma membrane 82.23 82.59
TraesCS5D01G148400.1 Wheat unclear 79.74 80.7
TraesCS5B01G142600.1 Wheat unclear 79.41 80.46
TraesCS5A01G143600.4 Wheat plasma membrane 79.2 80.24
HORVU5Hr1G045820.9 Barley extracellular, plasma membrane, vacuole 76.81 77.83
GSMUA_Achr2P21230_001 Banana extracellular, golgi, vacuole 62.73 65.95
PGSC0003DMT400067956 Potato extracellular 60.67 62.78
Solyc09g092160.2.1 Tomato extracellular 60.45 62.56
AT2G32810.1 Thale cress golgi, vacuole 58.83 61.22
CDY19166 Canola golgi, vacuole 58.83 61.15
CDY23785 Canola vacuole 59.05 61.03
Bra021814.1-P Field mustard plastid 58.83 60.81
KRH42784 Soybean nucleus 58.83 59.74
EER88554 Sorghum golgi, vacuole 40.41 51.45
OQU87043 Sorghum golgi, vacuole 45.94 51.27
EER92534 Sorghum endoplasmic reticulum, golgi 47.13 50.58
EES06516 Sorghum mitochondrion, plastid 40.09 50.0
EER92805 Sorghum vacuole 44.85 49.17
EES01845 Sorghum endoplasmic reticulum, golgi, vacuole 44.1 48.28
KXG22057 Sorghum vacuole 39.44 43.54
EES03081 Sorghum extracellular 38.35 42.65
KXG25431 Sorghum golgi 35.1 38.21
KXG36088 Sorghum endoplasmic reticulum, golgi, vacuole 33.91 37.4
Protein Annotations
KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23KEGG:00604+3.2.1.23Gene3D:2.60.120.260
Gene3D:2.60.120.740MapMan:21.3.2.2.2Gene3D:3.20.20.80EntrezGene:8076274UniProt:C5YSN7ncoils:Coil
EnsemblPlants:EES16726ProteinID:EES16726ProteinID:EES16726.1GO:GO:0003674GO:GO:0003824GO:GO:0004553
GO:GO:0004565GO:GO:0005488GO:GO:0005575GO:GO:0005618GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005773GO:GO:0005774GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009505GO:GO:0016020GO:GO:0016787GO:GO:0016798GO:GO:0030246GO:GO:0030312
InterPro:Galactose-bd-like_sfInterPro:Gly_Hdrlase_35_catInterPro:Glyco_hydro_35_CSInterPro:Glycoside_Hdrlase_35InterPro:Glycoside_hydrolase_SFInterPro:IPR000922
InterPro:IPR008979InterPro:Lectin_gal-bd_domPFAM:PF01301PFAM:PF02140PRINTS:PR00742ScanProsite:PS01182
PFscan:PS50228PANTHER:PTHR23421PANTHER:PTHR23421:SF74MetaCyc:PWY-6807EnsemblPlantsGene:SORBI_3008G052200SUPFAM:SSF49785
SUPFAM:SSF51445unigene:Sbi.6988SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001A88699RefSeq:XP_002442888.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr8:-:5249360..5266426
Molecular Weight (calculated)
101999.0 Da
IEP (calculated)
4.834
GRAVY (calculated)
-0.246
Length
923 amino acids
Sequence
(BLAST)
001: MAASPYPTPT GPPPLMGLLG ILLLLLIILV SLSPSIPLAE AGAEAAGVLR QVVGGDDDDG GNFFEPFNVT YDHRALILGG KRRMLVSAGL HYPRATPEMW
101: PSLIAKAKEG GVDVIETYIF WNGHEPAKGQ YYFEGRFDIV RFAKLVAAEG LFLFLRIGPY ACAEWNFGGF PVWLRDIPGI EFRTDNEPYK AEMQNFVTKI
201: VDIMKEEKLY SWQGGPIILQ QIENEYGNIQ GKYGQAGKRY MQWAAQMALA LDTGVPWVMC RQTDAPEQIL DTCNAFYCDG FKPNSYNKPT IWTEDWDGWY
301: ADWGEALPHR PAQDSAFAVA RFYQRGGSFQ NYYMYFGGTN FERTAGGPLQ ITSYDYDAPI DEYGILRQPK WGHLKDLHAA IKLCEPALTA VDGSPRYIKL
401: GPMQEAHVYS SENVHTNGSI SGNAQFCSAF LANIDEHKYA SVWIFGKSYS LPPWSVSILP DCETVAFNTA RVGTQTSFFN VESGSPSYSS RHKPRILSLG
501: GPYLSSTWWA SKEPVGIWSE DIFAAQGILE HLNVTKDISD YLSYTTRVNI SDEDVLYWNS EGLLPSLTID QIRDVVRIFV NGKLAGSQVG HWVSLNQPLQ
601: LVQGLNELTL LSEIVGLQNY GAFLEKDGAG FRGQVKLTGL SNGDIDLTNS LWTYQIGLKG EFSRIYSPEK QGSAGWSSMQ NDDTLSPFTW FKTTFDAPEG
701: NGPVAIDLGS MGKGQAWVNG HLIGRYWSLV APESGCPSSC NYAGNYGDSK CRSNCGIATQ SWYHIPREWL QESDNLLVLF EETGGDPSQI SLEVHYTKTI
801: CSKISETYYP PLSAWSRAAN GRPSVNTVAP ELRLQCDEGH VISKITFASY GTPTGDCQNF SVGNCHASTT LDLVAEACEG KNRCAISVTN DVFGDPCRKV
901: VKDLAVVAEC SPPSANKEPR DDM
Best Arabidopsis Sequence Match ( AT2G32810.1 )
(BLAST)
001: MAESIRTFSL QWRILSLIIA LLVYFPILSG SYFKPFNVSY DHRALIIAGK RRMLVSAGIH YPRATPEMWS DLIAKSKEGG ADVVQTYVFW NGHEPVKGQY
101: NFEGRYDLVK FVKLIGSSGL YLHLRIGPYV CAEWNFGGFP VWLRDIPGIE FRTDNEPFKK EMQKFVTKIV DLMREAKLFC WQGGPIIMLQ IENEYGDVEK
201: SYGQKGKDYV KWAASMALGL GAGVPWVMCK QTDAPENIID ACNGYYCDGF KPNSRTKPVL WTEDWDGWYT KWGGSLPHRP AEDLAFAVAR FYQRGGSFQN
301: YYMYFGGTNF GRTSGGPFYI TSYDYDAPLD EYGLRSEPKW GHLKDLHAAI KLCEPALVAA DAPQYRKLGS KQEAHIYHGD GETGGKVCAA FLANIDEHKS
401: AHVKFNGQSY TLPPWSVSIL PDCRHVAFNT AKVGAQTSVK TVESARPSLG SMSILQKVVR QDNVSYISKS WMALKEPIGI WGENNFTFQG LLEHLNVTKD
501: RSDYLWHKTR ISVSEDDISF WKKNGPNSTV SIDSMRDVLR VFVNKQLAGS IVGHWVKAVQ PVRFIQGNND LLLLTQTVGL QNYGAFLEKD GAGFRGKAKL
601: TGFKNGDLDL SKSSWTYQVG LKGEADKIYT VEHNEKAEWS TLETDASPSI FMWYKTYFDP PAGTDPVVLN LESMGRGQAW VNGQHIGRYW NIISQKDGCD
701: RTCDYRGAYN SDKCTTNCGK PTQTRYHVPR SWLKPSSNLL VLFEETGGNP FKISVKTVTA GILCGQVSES HYPPLRKWST PDYINGTMSI NSVAPEVHLH
801: CEDGHVISSI EFASYGTPRG SCDGFSIGKC HASNSLSIVS EACKGRNSCF IEVSNTAFIS DPCSGTLKTL AVMSRCSPSQ NMSDLSF
Arabidopsis Description
BGAL9Beta-galactosidase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV3]
SUBAcon: [golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.