CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36360.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048440_P003	Maize	vacuole	96.44	93.44
Os03t0165400-01	Rice	vacuole	88.84	88.94
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	95.01	87.15
TraesCS4B01G280900.1	Wheat	golgi, vacuole	86.58	86.27
TraesCS4A01G022500.2	Wheat	golgi, vacuole	86.34	86.14
TraesCS4D01G279400.4	Wheat	vacuole	86.34	85.73
HORVU4Hr1G074280.4	Barley	vacuole	85.75	85.24
GSMUA_Achr4P06620_001	Banana	cytosol	59.74	78.11
GSMUA_Achr4P13580_001	Banana	golgi, vacuole	79.22	76.84
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	76.96	75.97
VIT_04s0023g02690.t01	Wine grape	extracellular, golgi	71.73	71.48
KRH76716	Soybean	nucleus	71.85	71.26
KRH15132	Soybean	mitochondrion, nucleus	61.88	71.17
KRH28740	Soybean	nucleus	71.85	70.93
KRH05876	Soybean	nucleus	61.52	70.77
KRH61101	Soybean	nucleus	61.76	70.65
KRH08131	Soybean	nucleus	71.02	70.52
PGSC0003DMT400079498	Potato	vacuole	60.69	70.29
Solyc01g110000.2.1	Tomato	nucleus	60.57	70.15
VIT_18s0001g13230.t01	Wine grape	extracellular, golgi	71.14	70.14
KRH69834	Soybean	extracellular, golgi	70.31	69.81
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	44.77	69.69
AT1G45130.1	Thale cress	golgi, vacuole	60.45	69.54
Bra036334.1-P	Field mustard	golgi, vacuole	60.21	69.45
CDY53959	Canola	golgi, vacuole	60.21	69.45
CDY47949	Canola	golgi, vacuole	60.09	69.32
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	69.36	69.11
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	69.36	69.11
CDY36028	Canola	plastid	58.43	69.1
Bra014036.1-P	Field mustard	plastid	58.31	68.96
VIT_03s0038g00150.t01	Wine grape	vacuole	70.67	68.95
CDX69219	Canola	vacuole	67.34	68.81
Bra011677.1-P	Field mustard	golgi, vacuole	69.95	68.81
CDX75569	Canola	golgi, vacuole	67.34	68.56
AT4G36360.1	Thale cress	endoplasmic reticulum, golgi, vacuole	69.48	68.34
Solyc04g080840.1.1	Tomato	extracellular, golgi	59.62	68.3
CDY59693	Canola	vacuole	69.24	68.11
KRH51779	Soybean	vacuole	56.77	67.04
OQU87043	Sorghum	golgi, vacuole	62.95	64.09
EER88554	Sorghum	golgi, vacuole	53.09	61.66
CDY59691	Canola	cytosol, nucleus, vacuole	25.65	61.36
CDY59725	Canola	cytosol	22.21	59.94
Bra017756.1-P	Field mustard	cytosol, nucleus, vacuole	21.5	59.54
EES06516	Sorghum	mitochondrion, plastid	52.02	59.19
EER92534	Sorghum	endoplasmic reticulum, golgi	53.8	52.67
EES01845	Sorghum	endoplasmic reticulum, golgi, vacuole	50.48	50.42
EES16726	Sorghum	extracellular	49.17	44.85
KXG22057	Sorghum	vacuole	43.23	43.54
EES03081	Sorghum	extracellular	42.28	42.89
KXG25431	Sorghum	golgi	41.33	41.04
KXG36088	Sorghum	endoplasmic reticulum, golgi, vacuole	38.84	39.07

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	EntrezGene:8082139	UniProt:C5WWV7	EnsemblPlants:EER92805
ProteinID:EER92805	ProteinID:EER92805.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004565
GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
GO:GO:0030246	GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35
InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140
PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF51	MetaCyc:PWY-6807
EnsemblPlantsGene:SORBI_3001G493900	SUPFAM:SSF49785	SUPFAM:SSF51445	unigene:Sbi.3819	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI0001A82ACE	RefSeq:XP_002465807.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:76297433..76303917

Molecular Weight (calculated)

92751.8 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.255

Length

842 amino acids

Sequence
(BLAST)

001: MGRWWQAALL GCAVAVAVLA AAVECAVTYD KKAVLIDGQR RILFSGSIHY PRSTPDMWEG LIQKAKDGGL DVIQTYVFWN GHEPTPGNYY FEERYDLVRF
101: IKTVQKAGLF VHLRIGPYIC GEWNFGGFPV WLKYVPGISF RTDNEPFKTA MQGFTEKIVG MMKSEKLFAS QGGPIILSQI ENEYGPEGKE LGAAGQAYIN
201: WAAKMAIGLG TGVPWVMCKE EDAPDPVINA CNGFYCDAFS PNKPYKPTMW TEAWSGWFTE FGGTIRQRPV EDLAFAVARF VQKGGSFINY YMYHGGTNFG
301: RTAGGPFITT SYDYDAPIDE YGLVREPKHS HLKELHRAVK LCEQALVSVD PAITTLGTMQ EAHVFRSPSG CAAFLANYNS NSYAKVVFNN EQYSLPPWSI
401: SILPDCKNVV FNSATVGVQT SQMQMWGDGA SSMMWERYDE EVDSLAAAPL LTTTGLLEQL NVTRDSSDYL WYITSVDISP SENFLQGGGK PLSLSVLSAG
501: HALHVFVNGE LQGSAYGTRE DRRIKYNGNA NLRAGTNKIA LLSVACGLPN VGVHYETWNT GVGGPVGLHG LNEGSRDLTW QTWSYQVGLK GEQMNLNSLE
601: GSTSVEWMQG SLIAQNQQPL SWYRAYFETP SGDEPLALDM GSMGKGQIWI NGQSIGRYWT AYADGDCKEC SYTGTFRAPK CQAGCGQPTQ RWYHVPRSWL
701: QPTRNLLVVF EELGGDSSKI ALVKRSVSSV CADVSEDHPN IKNWQIESYG EREYHRAKVH LRCSPGQSIS AIKFASFGTP MGTCGNFQQG DCHSANSHTV
801: LEKKCIGLQR CAVAISPESF GGDPCPRVTK RVAVEAVCSP TA

Best Arabidopsis Sequence Match ( AT4G36360.1 )
(BLAST)

001: MREMGTGDSA SRLILWFCLG FLILGVGFVQ CGVTYDRKAL LINGQRRILF SGSIHYPRST PDMWEDLIQK AKDGGIDVIE TYVFWNLHEP SPGKYDFEGR
101: NDLVRFVKTI HKAGLYAHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN EPFKRAMKGF TERIVELMKS ENLFESQGGP IILSQIENEY GRQGQLLGAE
201: GHNYMTWAAK MAIATETGVP WVMCKEDDAP DPVINTCNGF YCDSFAPNKP YKPLIWTEAW SGWFTEFGGP MHHRPVQDLA FGVARFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVTTSYDY DAPIDEYGLI RQPKYGHLKE LHRAIKMCEK ALVSADPVVT SIGNKQQAHV YSAESGDCSA FLANYDTESA ARVLFNNVHY
401: NLPPWSISIL PDCRNAVFNT AKVGVQTSQM EMLPTDTKNF QWESYLEDLS SLDDSSTFTT HGLLEQINVT RDTSDYLWYM TSVDIGDSES FLHGGELPTL
501: IIQSTGHAVH IFVNGQLSGS AFGTRQNRRF TYQGKINLHS GTNRIALLSV AVGLPNVGGH FESWNTGILG PVALHGLSQG KMDLSWQKWT YQVGLKGEAM
601: NLAFPTNTPS IGWMDASLTV QKPQPLTWHK TYFDAPEGNE PLALDMEGMG KGQIWVNGES IGRYWTAFAT GDCSHCSYTG TYKPNKCQTG CGQPTQRWYH
701: VPRAWLKPSQ NLLVIFEELG GNPSTVSLVK RSVSGVCAEV SEYHPNIKNW QIESYGKGQT FHRPKVHLKC SPGQAIASIK FASFGTPLGT CGSYQQGECH
801: AATSYAILER KCVGKARCAV TISNSNFGKD PCPNVLKRLT VEAVCAPETS VSTWRP

Arabidopsis Description

BGAL3Beta-galactosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV9]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.