CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13750.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044290_P005	Maize	golgi, vacuole	96.86	96.51
Os01t0580200-01	Rice	golgi, vacuole	92.14	92.14
HORVU3Hr1G050450.12	Barley	golgi, vacuole	89.96	89.53
TraesCS3A01G208600.1	Wheat	plastid	89.48	88.62
TraesCS3D01G211500.2	Wheat	golgi, vacuole	89.36	88.5
TraesCS3B01G235100.1	Wheat	golgi, vacuole	88.75	87.69
GSMUA_Achr6P35850_001	Banana	golgi, vacuole	76.78	77.06
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	71.46	70.27
CDX88594	Canola	golgi, vacuole	27.57	70.15
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	56.83	70.15
Solyc03g121540.2.1	Tomato	nucleus	70.86	69.93
PGSC0003DMT400006654	Potato	golgi, vacuole	70.5	69.57
KRH10007	Soybean	nucleus	70.37	69.29
PGSC0003DMT400083896	Potato	extracellular	69.89	69.22
Solyc12g044880.1.1	Tomato	golgi, vacuole	69.65	68.98
KRH23324	Soybean	vacuole	69.89	68.73
Solyc06g062580.2.1	Tomato	nucleus	69.89	68.73
Bra027403.1-P	Field mustard	golgi, vacuole	69.53	68.53
Solyc12g008840.1.1	Tomato	extracellular	59.98	68.51
CDX97513	Canola	golgi, vacuole	69.53	68.45
PGSC0003DMT400012359	Potato	golgi, vacuole	69.53	68.45
KRH44153	Soybean	nucleus	69.77	68.45
KRH47126	Soybean	nucleus	69.77	68.28
EER88554	Sorghum	golgi, vacuole	59.85	68.28
CDY37486	Canola	golgi, vacuole	69.17	68.18
CDY23637	Canola	golgi, vacuole	69.04	68.06
CDY51738	Canola	golgi, vacuole	69.04	68.06
AT3G13750.1	Thale cress	golgi, vacuole	69.53	67.89
KRH37385	Soybean	nucleus	59.13	67.82
KRH12385	Soybean	vacuole	59.01	67.68
CDX94367	Canola	mitochondrion	57.32	66.57
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	67.47	66.51
Bra021506.1-P	Field mustard	vacuole	69.04	66.32
KRH02714	Soybean	golgi, vacuole	67.11	66.15
VIT_11s0016g02200.t01	Wine grape	vacuole	66.75	66.03
Bra019644.1-P	Field mustard	golgi, plastid, vacuole	56.71	65.87
EES06516	Sorghum	mitochondrion, plastid	58.89	65.81
CDX76255	Canola	extracellular	10.16	65.62
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	35.07	64.88
CDX95380	Canola	vacuole	56.83	64.65
Bra013956.1-P	Field mustard	cytosol, mitochondrion, plastid, vacuole	57.19	64.62
AT5G56870.1	Thale cress	vacuole	56.47	64.5
CDX76254	Canola	golgi, nucleus, vacuole	45.59	64.12
AT4G26140.7	Thale cress	vacuole	58.04	63.74
Bra006850.1-P	Field mustard	golgi, vacuole	55.62	63.71
CDX92753	Canola	golgi, vacuole	54.78	63.62
CDY11899	Canola	golgi, vacuole	55.5	63.57
Bra019120.1-P	Field mustard	golgi, vacuole	54.66	63.48
CDX89360	Canola	mitochondrion	53.57	63.38
CDY42755	Canola	vacuole	54.53	63.34
EER92805	Sorghum	vacuole	64.09	62.95
Bra035634.1-P	Field mustard	golgi, vacuole	54.9	62.88
CDY20708	Canola	golgi, vacuole	54.78	62.74
CDY32919	Canola	golgi, vacuole	54.78	62.74
AT3G52840.2	Thale cress	golgi, vacuole	56.83	60.18
CDY70594	Canola	cytosol	29.63	58.89
CDY69471	Canola	cytosol	29.5	58.65
EER92534	Sorghum	endoplasmic reticulum, golgi	54.05	51.98
EES01845	Sorghum	endoplasmic reticulum, golgi, vacuole	50.3	49.35
EES16726	Sorghum	extracellular	51.27	45.94
EES03081	Sorghum	extracellular	44.26	44.1
KXG22057	Sorghum	vacuole	44.26	43.78
KXG25431	Sorghum	golgi	41.11	40.09
KXG36088	Sorghum	endoplasmic reticulum, golgi, vacuole	39.54	39.07

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	UniProt:A0A1W0VY58	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004565	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS
InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	EnsemblPlants:OQU87043
ProteinID:OQU87043	ProteinID:OQU87043.1	PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182
PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF74	MetaCyc:PWY-6807	EnsemblPlantsGene:SORBI_3003G197100	SUPFAM:SSF49785
SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0009DC8D54	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:52232359..52241491

Molecular Weight (calculated)

91841.7 Da

IEP (calculated)

6.208

GRAVY (calculated)

-0.290

Length

827 amino acids

Sequence
(BLAST)

001: MAPAAPAGLA AVVVVAVLAA AVSAAVTYDR KAVVVNGQRR ILMSGSVHYP RSVPEMWPDL IQKAKDGGLD VVQTYVFWNG HEPSRGQYYF EGRYDLVHFI
101: KLVKQAGLYV HLRIGPYVCA EWNFGGFPVW LKYVPGISFR TDNEPFKAEM QKFTTKIVDM MKSEGLFEWQ GGPIILSQIE NEFGPLEWDQ GEPAKAYASW
201: AANMAVALNT SVPWVMCKED DAPDPIINTC NGFYCDWFSP NKPHKPTMWT EAWTSWYTGF GIPVPHRPVE DLAYGVAKFI QKGGSFVNYY MYHGGTNFGR
301: TAGGPFIATS YDYDAPIDEY GLLREPKWGH LKELHKAIKL CEPALVAGDP IVTSLGNAQQ ASVFRSSTDA CVAFLENKDK VSYARVSFNG MHYNLPPWSI
401: SILPDCKTTV YNTARVGSQI SQMKMEWAGG FTWQSYNEDI NSLGDESFVT VGLLEQINVT RDNTDYLWYT TYVDVAQDEQ FLSNGKNPVL TVMSAGHALH
501: IFVNGQLTGT VYGSVDDPKL TYRGNVKLWP GSNTISCLSI AVGLPNVGEH FETWNAGILG PVTLDGLNEG RRDLTWQKWT YKVGLKGEDL SLHSLSGSSS
601: VEWGEPMQKQ PLTWYKAFFN APDGDEPLAL DMSSMGKGQI WINGQGIGRY WPGYKASGTC GICDYRGEYD EKKCQTNCGD SSQRWYHVPR SWLNPTGNLL
701: VIFEEWGGDP TGISMVKRTT GSICADVSEW QPSMTNWRTK DYEKAKIHLQ CDHGRKMTDI KFASFGTPQG SCGSYSEGGC HAHKSYDIFW KNCIGQERCG
801: VSVVPNVFGG DPCPGTMKRA VVEAICG

Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)

001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA

Arabidopsis Description

BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.