CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13750.1	CDY03088	AT2G01950.1	19000166
AT3G13750.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027403.1-P	Field mustard	golgi, vacuole	99.76	99.88
CDY23637	Canola	golgi, vacuole	99.17	99.28
CDY51738	Canola	golgi, vacuole	95.83	95.95
AT3G13750.1	Thale cress	golgi, vacuole	96.43	95.63
CDY37486	Canola	golgi, vacuole	95.36	95.47
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	80.12	80.02
KRH10007	Soybean	nucleus	79.64	79.64
KRH23324	Soybean	vacuole	78.93	78.83
KRH44153	Soybean	nucleus	78.81	78.53
KRH47126	Soybean	nucleus	78.69	78.22
Solyc03g121540.2.1	Tomato	nucleus	77.5	77.69
PGSC0003DMT400006654	Potato	golgi, vacuole	76.9	77.09
PGSC0003DMT400083896	Potato	extracellular	76.55	77.01
Solyc12g044880.1.1	Tomato	golgi, vacuole	75.95	76.41
Solyc06g062580.2.1	Tomato	nucleus	76.43	76.34
PGSC0003DMT400012359	Potato	golgi, vacuole	76.31	76.31
GSMUA_Achr7P08970_001	Banana	vacuole	64.29	73.97
CDX88594	Canola	golgi, vacuole	27.98	72.31
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	62.86	71.74
GSMUA_Achr7P08940_001	Banana	vacuole	62.02	71.17
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	62.14	71.12
CDX94367	Canola	mitochondrion	60.24	71.07
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	61.9	70.65
GSMUA_Achr6P35850_001	Banana	golgi, vacuole	69.05	70.39
OQU87043	Sorghum	golgi, vacuole	68.45	69.53
Os01t0580200-01	Rice	golgi, vacuole	67.98	69.04
Zm00001d044290_P005	Maize	golgi, vacuole	67.98	68.8
TraesCS3A01G208600.1	Wheat	plastid	67.86	68.26
CDX89360	Canola	mitochondrion	56.67	68.1
TraesCS3D01G211500.2	Wheat	golgi, vacuole	67.62	68.02
CDX76255	Canola	extracellular	10.36	67.97
CDX92753	Canola	golgi, vacuole	57.5	67.84
TraesCS6A01G185400.1	Wheat	golgi, vacuole	58.33	67.68
TraesCS3B01G235100.1	Wheat	golgi, vacuole	67.38	67.62
TraesCS7B01G264200.1	Wheat	plasma membrane, vacuole	57.74	67.55
HORVU3Hr1G050450.12	Barley	golgi, vacuole	66.79	67.51
TraesCS7D01G359500.1	Wheat	golgi	57.62	67.5
Zm00001d046357_P001	Maize	extracellular	57.98	67.45
Os02t0219200-01	Rice	peroxisome, vacuole	40.12	67.4
TraesCS6D01G172400.1	Wheat	golgi, vacuole	58.1	67.31
TraesCS6B01G214100.1	Wheat	golgi, vacuole	57.98	67.17
EER88554	Sorghum	golgi, vacuole	57.98	67.17
CDX95380	Canola	vacuole	57.98	66.99
CDY42755	Canola	vacuole	56.67	66.85
TraesCS7A01G363600.1	Wheat	plasma membrane, vacuole	57.14	66.85
CDX76254	Canola	golgi, nucleus, vacuole	46.79	66.84
Os06t0573600-01	Rice	plasma membrane, vacuole	56.67	66.57
CDY11899	Canola	golgi, vacuole	57.14	66.48
EES06516	Sorghum	mitochondrion, plastid	57.98	65.81
CDY32919	Canola	golgi, vacuole	56.55	65.79
CDY47949	Canola	golgi, vacuole	57.14	65.75
CDY53959	Canola	golgi, vacuole	57.02	65.62
CDY36028	Canola	plastid	55.36	65.31
HORVU7Hr1G086690.2	Barley	plasma membrane, vacuole	57.86	65.06
CDY20708	Canola	golgi, vacuole	55.83	64.96
HORVU6Hr1G039490.6	Barley	plastid	58.57	64.4
CDY70594	Canola	cytosol	31.19	62.98
CDX75569	Canola	golgi, vacuole	61.9	62.88
CDX69219	Canola	vacuole	61.55	62.74
CDY69471	Canola	cytosol	30.95	62.5
CDY59693	Canola	vacuole	63.45	62.27
GSMUA_Achr2P16780_001	Banana	plastid	61.79	61.71
CDX98327	Canola	golgi, vacuole	18.33	61.35
Zm00001d053585_P002	Maize	plastid	56.67	57.42
CDY15749	Canola	golgi, vacuole	54.88	54.62
CDY59691	Canola	cytosol, nucleus, vacuole	22.74	54.26
CDY31204	Canola	golgi, vacuole	54.4	54.15
CDY04567	Canola	golgi, vacuole	54.64	54.0
CDX83288	Canola	golgi, vacuole	54.05	53.73
CDY43757	Canola	golgi, vacuole	47.02	53.31
CDY59725	Canola	cytosol	19.76	53.21
CDX84446	Canola	golgi, vacuole	46.79	53.04
CDY70160	Canola	vacuole	33.81	52.11
CDY28339	Canola	vacuole	46.55	49.62
CDY34975	Canola	golgi, plasma membrane, vacuole	46.55	49.62
CDX67790	Canola	vacuole	47.86	49.33
CDY65885	Canola	vacuole	48.1	49.21
CDY39845	Canola	vacuole	41.67	48.61
CDY23785	Canola	vacuole	51.43	48.38
CDY19166	Canola	golgi, vacuole	51.07	48.31
CDX93659	Canola	vacuole	46.67	47.92
CDX84445	Canola	vacuole	40.83	47.64
CDY31349	Canola	vacuole	41.67	47.23
CDY69031	Canola	cytosol, plastid, vacuole	33.69	45.57
CDY43756	Canola	cytosol, nucleus, peroxisome	27.5	45.29
CDY31414	Canola	cytosol, golgi, mitochondrion, peroxisome	40.6	43.72
CDY32304	Canola	cytosol	45.0	42.86
CDX75479	Canola	vacuole	42.62	42.37
CDX69103	Canola	vacuole	42.26	42.06
CDY40650	Canola	vacuole	42.14	41.94
CDX72512	Canola	vacuole	42.14	41.94
CDY70118	Canola	cytosol	28.45	40.24
CDX72747	Canola	vacuole	41.07	38.94
CDY53917	Canola	plastid	46.31	37.8
CDY22419	Canola	cytosol	41.67	36.61
CDY02241	Canola	golgi, vacuole	42.26	35.89
CDX67763	Canola	golgi, plasma membrane, vacuole	32.86	35.8
CDX89744	Canola	vacuole	42.5	32.87

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:A0A078EDW1	EnsemblPlants:CDX97513	ProteinID:CDX97513
ProteinID:CDX97513.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004565	GO:GO:0005488
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246
EnsemblPlantsGene:GSBRNA2T00104720001	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF
InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742
ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF74	MetaCyc:PWY-6807	SUPFAM:SSF49785
SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EE4198	SEG:seg	:

Description

BnaA05g25660D

Coordinates

chrLK031900:+:67936..72897

Molecular Weight (calculated)

92927.4 Da

IEP (calculated)

8.361

GRAVY (calculated)

-0.278

Length

840 amino acids

Sequence
(BLAST)

001: MKNVAIAAAA SALFLLGFLV SSVSASVSYD SRAITINGER RILISGSIHY PRSTPEMWPD LIRKAKEGGL DVIQTYVFWN GHEPSPGKYY FEGNYDLVKF
101: VKLVQQSGLY LHLRIGPYVC AEWNFGGFPV WLKYVPGISF RTDNAPFKAQ MQRFTTKIVN MMKAERLFES QGGPIILSQI ENEYGPMEYE LGAPGRSYTN
201: WAAKMAVGLG TGVPWVMCKQ DDAPDPIINA CNGFYCDYFS PNKAYKPKMW TEAWTGWFTK FGGPVPYRPA EDMAFSVARF IQKGGSFINY YMYHGGTNFG
301: RTAGGPFIAT SYDYDAPLDE YGLERQPKWG HLKDLHRAIK LCEPALVSGE PTRMSLGNYQ EAHVYKSKSG ACSAFLANYN PRSYAKVSFG SNHYNLPPWS
401: ISILPDCKNT VYNTARVGAQ TSRMKMVEVP VHGGLSWQAY NEDPSTYIDE SFTMVGLVEQ INTTRDTSDY LWYMTDVKID SNEGFLRTGD LPTLTVLSAG
501: HAMHVFINGQ LSGSAYGSLD SPKLTFRKGV NLRAGFNKIA ILSIAVGLPN VGPHFETWNA GVLGPVNLNG LNGGRRDLSW QKWTYKVGLR GESLSLHSLG
601: GSSSVEWAEG AYVAQKQPLT WYKTTFSAPA GDSPLAVDMG SMGKGQIWIN GQSVGRHWPA YKAVGSCGEC SYTGTFNENK CLRNCGEASQ RWYHVPRSWL
701: KPTGNLLVVF EEWGGDPNGI SLVRREVDSV CADIYEWQST LVNYQLHSSG KVNKPLHPKV HLQCGPGQKM TTVKFASFGT PEGTCGSYRQ GSCHAHHSYD
801: AFNRLCVGQN WCSVTVAPEM FGGDPCPNVM KKLAVEAVCA

Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)

001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA

Arabidopsis Description

BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.