Factsheet for PGSC0003DMT400083896

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 7
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13750.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044880.1.1	Tomato	golgi, vacuole	98.08	98.08
PGSC0003DMT400012359	Potato	golgi, vacuole	82.63	82.14
PGSC0003DMT400006654	Potato	golgi, vacuole	81.92	81.62
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	78.92	78.36
KRH10007	Soybean	nucleus	78.8	78.33
KRH23324	Soybean	vacuole	78.68	78.12
Bra027403.1-P	Field mustard	golgi, vacuole	77.01	76.64
CDX97513	Canola	golgi, vacuole	77.01	76.55
AT3G13750.1	Thale cress	golgi, vacuole	77.48	76.39
CDY23637	Canola	golgi, vacuole	76.53	76.16
CDY51738	Canola	golgi, vacuole	76.41	76.04
KRH44153	Soybean	nucleus	76.65	75.92
CDY37486	Canola	golgi, vacuole	75.93	75.57
KRH47126	Soybean	nucleus	76.41	75.5
Bra021506.1-P	Field mustard	vacuole	76.41	74.1
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	57.6	71.79
GSMUA_Achr7P08970_001	Banana	vacuole	62.28	71.23
GSMUA_Achr6P35850_001	Banana	golgi, vacuole	69.58	70.51
Os01t0580200-01	Rice	golgi, vacuole	69.58	70.25
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	61.56	70.03
OQU87043	Sorghum	golgi, vacuole	69.22	69.89
Zm00001d044290_P005	Maize	golgi, vacuole	69.46	69.88
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	60.96	69.16
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	60.96	69.16
GSMUA_Achr7P08940_001	Banana	vacuole	60.48	68.99
TraesCS3A01G208600.1	Wheat	plastid	68.26	68.26
HORVU3Hr1G050450.12	Barley	golgi, vacuole	67.9	68.23
TraesCS3B01G235100.1	Wheat	golgi, vacuole	68.38	68.22
TraesCS3D01G211500.2	Wheat	golgi, vacuole	68.14	68.14
PGSC0003DMT400079498	Potato	vacuole	57.48	66.02
Zm00001d046357_P001	Maize	extracellular	57.01	65.93
EER88554	Sorghum	golgi, vacuole	57.13	65.79
TraesCS7B01G264200.1	Wheat	plasma membrane, vacuole	56.53	65.74
Os06t0573600-01	Rice	plasma membrane, vacuole	56.29	65.73
TraesCS7D01G359500.1	Wheat	golgi	56.05	65.27
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	34.85	65.1
TraesCS6A01G185400.1	Wheat	golgi, vacuole	56.41	65.06
TraesCS7A01G363600.1	Wheat	plasma membrane, vacuole	55.93	65.04
TraesCS6D01G172400.1	Wheat	golgi, vacuole	56.05	64.55
TraesCS6B01G214100.1	Wheat	golgi, vacuole	55.93	64.41
Os02t0219200-01	Rice	peroxisome, vacuole	38.44	64.2
EES06516	Sorghum	mitochondrion, plastid	56.53	63.78
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	41.2	63.59
HORVU7Hr1G086690.2	Barley	plasma membrane, vacuole	56.29	62.92
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	63.23	62.49
HORVU6Hr1G039490.6	Barley	plastid	56.77	62.04
GSMUA_Achr2P16780_001	Banana	plastid	61.2	60.76
Zm00001d053585_P002	Maize	plastid	55.45	55.85
PGSC0003DMT400020941	Potato	extracellular	55.69	54.58
PGSC0003DMT400039333	Potato	extracellular, golgi	50.18	50.12
PGSC0003DMT400057597	Potato	golgi, vacuole	40.96	49.35
PGSC0003DMT400023851	Potato	nucleus, peroxisome, vacuole	41.8	48.2
PGSC0003DMT400067956	Potato	extracellular	51.14	47.87
PGSC0003DMT400059880	Potato	cytosol	44.07	47.79
PGSC0003DMT400023852	Potato	extracellular	35.57	47.22
PGSC0003DMT400031178	Potato	vacuole	43.71	44.03
PGSC0003DMT400015841	Potato	endoplasmic reticulum, golgi, vacuole	42.28	43.63

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0004565	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	GO:GO:0030246	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35
InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	UniProt:M1D7B3	PFAM:PF01301
PFAM:PF02140	EnsemblPlantsGene:PGSC0003DMG400033646	PGSC:PGSC0003DMG400033646	EnsemblPlants:PGSC0003DMT400083896	PRINTS:PR00742	ScanProsite:PS01182
PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF74	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI000296F661	SEG:seg	:	:	:

Description

Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400033646]

Coordinates

chr12:+:51879746..51886507

Molecular Weight (calculated)

93249.9 Da

IEP (calculated)

6.591

GRAVY (calculated)

-0.235

Length

835 amino acids

Sequence
(BLAST)

001: MGSWIAMLLM LLLCLWVSCG IASVSYDHKA IIINGQRKIL ISGSIHYPRS TPEMWPDLIQ KAKEGGVDVI QTYVFWNGHE PEEGKYYFEE RYDLVKFIKV
101: VQEAGLYVHL RIGPYACAEW NFGGFPVWLK YVPGISFRTD NEPFKAAMQK FTTKIVDMMK AEKLYETQGG PIILSQIENE YGPMEWELGE PGKVYSEWAA
201: KMAVDLGTGV PWIMCKQDDV PDPIINTCNG FYCDYFTPNK ANKPKMWTEA WTAWFTEFGG PVPYRPAEDM AFSVARFIQT GGSFINYYMY HGGTNFGRTS
301: GGPFIATSYD YDAPLDEFGS LRQPKWGHLK DLHRAIKLCE PALVSADPTV TSLGNYQEAR VFKSESGACA AFLANYNQHS FAKVAFGNMH YNLPPWSISI
401: LPDCKNTVYN TARVGAQSAQ MKMTPVSRGF SWESYNEDAA LHEDDTFTVV GLLEQINITR DVSDYLWYMT DIQIDPTEGF LNSGNWPWLT VFSAGHALHV
501: FVNGQLAGTV YGSLEDPKLT FSNGINLRAG VNKISLLSIA VGLPNVGPHF ETWNAGVLGP VSLNGLNEGT RDLTWQKWFY KVGLKGEALS LHSLSGSPSV
601: EWVEGSLVAQ KQPLSWYKTT FNAPDGNEPL ALDMNTMGKG QVWINGQSLG RHWPAYKSSG SCSVCNYTGW FDEKKCLTNC GEGSQRWYHV PRSWLYPTGN
701: LLVVFEEWGG DPYGITLVKR EIASVCANIY EWQPQLLNWQ RLVSGKFDRP LRPKVHLKCA PGQKISSIKF ASFGTPGGVC GSFQQGSCHA PRSYDAFKKN
801: CVGQESCSVQ VTPENFGGDP CRNVLKKLSV EAICS

Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)

001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA

Arabidopsis Description

BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.