Factsheet for PGSC0003DMT400009496

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, peroxisome, nucleus

Predictor Summary:

nucleus 2
golgi 1
vacuole 1
extracellular 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g080840.1.1	Tomato	extracellular, golgi	96.12	70.75
GSMUA_Achr4P06620_001	Banana	cytosol	65.99	55.43
KRH51779	Soybean	vacuole	70.06	53.16
Bra036334.1-P	Field mustard	golgi, vacuole	71.53	53.01
CDY47949	Canola	golgi, vacuole	71.35	52.88
KRH15132	Soybean	mitochondrion, nucleus	71.53	52.87
KRH61101	Soybean	nucleus	71.9	52.85
CDY53959	Canola	golgi, vacuole	71.16	52.74
KRH05876	Soybean	nucleus	71.16	52.6
Bra014036.1-P	Field mustard	plastid	68.39	51.97
CDY36028	Canola	plastid	68.21	51.83
PGSC0003DMT400079498	Potato	vacuole	69.5	51.72
AT1G45130.1	Thale cress	golgi, vacuole	69.87	51.64
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	61.37	49.55
VIT_18s0001g13230.t01	Wine grape	extracellular, golgi	75.6	47.89
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	72.09	45.72
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	70.98	45.44
GSMUA_Achr4P13580_001	Banana	golgi, vacuole	72.64	45.28
EER92805	Sorghum	vacuole	69.69	44.77
Os03t0165400-01	Rice	vacuole	69.13	44.47
TraesCS4A01G022500.2	Wheat	golgi, vacuole	68.02	43.6
TraesCS4B01G280900.1	Wheat	golgi, vacuole	67.84	43.43
TraesCS4D01G279400.4	Wheat	vacuole	68.02	43.4
Zm00001d048440_P003	Maize	vacuole	69.5	43.27
HORVU4Hr1G074280.4	Barley	vacuole	67.65	43.21
PGSC0003DMT400012359	Potato	golgi, vacuole	65.62	42.26
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	70.61	41.61
PGSC0003DMT400006654	Potato	golgi, vacuole	64.33	41.53
PGSC0003DMT400083896	Potato	extracellular	63.59	41.2
PGSC0003DMT400057597	Potato	golgi, vacuole	52.31	40.84
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	29.94	36.24
PGSC0003DMT400020941	Potato	extracellular	53.97	34.27
PGSC0003DMT400023852	Potato	extracellular	39.56	34.02
PGSC0003DMT400039333	Potato	extracellular, golgi	50.65	32.78
PGSC0003DMT400059880	Potato	cytosol	46.58	32.73
PGSC0003DMT400023851	Potato	nucleus, peroxisome, vacuole	41.59	31.08
PGSC0003DMT400067956	Potato	extracellular	50.09	30.38
PGSC0003DMT400015841	Potato	endoplasmic reticulum, golgi, vacuole	41.96	28.06
PGSC0003DMT400031178	Potato	vacuole	41.4	27.02

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575
GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505
GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS
InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	UniProt:M0ZWC9	PFAM:PF01301	EnsemblPlantsGene:PGSC0003DMG400003703
PGSC:PGSC0003DMG400003703	EnsemblPlants:PGSC0003DMT400009496	PRINTS:PR00742	ScanProsite:PS01182	PANTHER:PTHR23421	PANTHER:PTHR23421:SF51
SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI000294EDD6	:	:	:

Description

Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400003703]

Coordinates

chr4:+:70246313..70249597

Molecular Weight (calculated)

59880.6 Da

IEP (calculated)

6.375

GRAVY (calculated)

-0.291

Length

541 amino acids

Sequence
(BLAST)

001: MQKFTNKIVE MMKSENLFES QGGPIILSQI ENEYQPEREA LGAAGEAYVQ WAAQMAVGLN TGVPWVMCKE DDAPDPIINT CNGFYCDEFS PNKPYKPTMW
101: TEAWTGWFTE FGGTIPMRPV QDLAFAVARF IQKGGSFVNY YMFHGGTNFG RTAGGPFITT SYDYDAPIDE YGLIREPKYS HLKEFHRVIK LCESALLSSD
201: PTVVSLGNYQ QAHVFSSGKG NCAAFLSNYD SNSAATVVFN NKHFNLPPWS ISILPDCSHV AFNTAKVGAR TSQVRMTPTV SQLHSWGAYS EDVFSLEDSS
301: TFEAVGLLEQ INITRDNSDY LWYITSVDIS PSESFLRGGQ KPTLNVYSSG HAVHVFVNGK LSGSSYGTRK DTKFTFTGPV DLQAGTNRIE LLSIAVGLPV
401: GLKGETMNLI SQHGASSIEW IGGAVATQGQ QPLKWYKAYF DAPEGNDPVA LDMRSMGKGQ VWINGQSIGR YWTASANGKC DDFHYAGTYR QTKCQLGCGQ
501: PTQKWYHVPR SWLKPTQNLL ILFEEIGGDV SRILLVKRTT S

Best Arabidopsis Sequence Match ( AT1G45130.1 )
(BLAST)

001: MGTTILVLSK ILTFLLTTML IGSSVIQCSS VTYDKKAIVI NGHRRILLSG SIHYPRSTPE MWEDLIKKAK DGGLDVIDTY VFWNGHEPSP GTYNFEGRYD
101: LVRFIKTIQE VGLYVHLRIG PYVCAEWNFG GFPVWLKYVD GISFRTDNGP FKSAMQGFTE KIVQMMKEHR FFASQGGPII LSQIENEFEP DLKGLGPAGH
201: SYVNWAAKMA VGLNTGVPWV MCKEDDAPDP IINTCNGFYC DYFTPNKPYK PTMWTEAWSG WFTEFGGTVP KRPVEDLAFG VARFIQKGGS YINYYMYHGG
301: TNFGRTAGGP FITTSYDYDA PIDEYGLVQE PKYSHLKQLH QAIKQCEAAL VSSDPHVTKL GNYEEAHVFT AGKGSCVAFL TNYHMNAPAK VVFNNRHYTL
401: PAWSISILPD CRNVVFNTAT VAAKTSHVQM VPSGSILYSV ARYDEDIATY GNRGTITARG LLEQVNVTRD TTDYLWYTTS VDIKASESFL RGGKWPTLTV
501: DSAGHAVHVF VNGHFYGSAF GTRENRKFSF SSQVNLRGGA NKIALLSVAV GLPNVGPHFE TWATGIVGSV VLHGLDEGNK DLSWQKWTYQ AGLRGESMNL
601: VSPTEDSSVD WIKGSLAKQN KQPLTWYKAY FDAPRGNEPL ALDLKSMGKG QAWINGQSIG RYWMAFAKGD CGSCNYAGTY RQNKCQSGCG EPTQRWYHVP
701: RSWLKPKGNL LVLFEELGGD ISKVSVVKRS VN

Arabidopsis Description

BGAL5Beta-galactosidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAJ7]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.