Factsheet for PGSC0003DMT400023851

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, peroxisome, nucleus

Predictor Summary:

nucleus 2
golgi 1
vacuole 1
extracellular 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g018490.1.1	Tomato	cytosol	94.06	90.2
PGSC0003DMT400023852	Potato	extracellular	59.94	69.0
VIT_18s0001g02220.t01	Wine grape	vacuole	64.36	57.32
KRH53267	Soybean	golgi, vacuole	54.7	56.81
VIT_18s0001g02230.t01	Wine grape	golgi, vacuole	64.23	56.64
KRH64633	Soybean	vacuole	54.42	56.61
AT1G77410.3	Thale cress	golgi, vacuole	61.88	54.63
Os05t0428100-00	Rice	golgi, vacuole	55.8	49.81
GSMUA_Achr11P...	Banana	golgi, vacuole	55.52	49.2
TraesCS1D01G267600.2	Wheat	endoplasmic reticulum, extracellular, vacuole	55.25	48.78
TraesCS1B01G278400.1	Wheat	plastid	55.39	48.66
TraesCS1A01G267700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	55.39	48.66
HORVU1Hr1G065290.7	Barley	vacuole	54.97	48.42
Zm00001d010212_P002	Maize	endoplasmic reticulum, extracellular, golgi	54.7	48.29
KXG22057	Sorghum	vacuole	55.39	47.97
HORVU3Hr1G081980.9	Barley	cytosol, vacuole	49.45	47.48
TraesCS3A01G386100.3	Wheat	vacuole	52.21	45.49
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	41.85	45.22
Zm00001d042656_P001	Maize	golgi, vacuole	43.09	44.44
TraesCS3B01G418200.1	Wheat	vacuole	50.83	44.18
TraesCS3D01G379100.3	Wheat	vacuole	51.52	43.93
PGSC0003DMT400079498	Potato	vacuole	42.82	42.64
PGSC0003DMT400083896	Potato	extracellular	48.2	41.8
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	31.08	41.59
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	48.48	41.54
PGSC0003DMT400006654	Potato	golgi, vacuole	47.93	41.41
PGSC0003DMT400031178	Potato	vacuole	47.24	41.25
PGSC0003DMT400015841	Potato	endoplasmic reticulum, golgi, vacuole	45.99	41.16
PGSC0003DMT400057597	Potato	golgi, vacuole	38.95	40.69
PGSC0003DMT400012359	Potato	golgi, vacuole	46.96	40.48
PGSC0003DMT400039333	Potato	extracellular, golgi	46.69	40.43
PGSC0003DMT400020941	Potato	extracellular	47.51	40.38
PGSC0003DMT400059880	Potato	cytosol	41.71	39.22
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	24.17	39.15
PGSC0003DMT400067956	Potato	extracellular	45.99	37.33

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
GO:GO:0030246	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922
InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	UniProt:M1AJ24	PFAM:PF01301	PFAM:PF02140	EnsemblPlantsGene:PGSC0003DMG401009228
PGSC:PGSC0003DMG401009228	EnsemblPlants:PGSC0003DMT400023851	PRINTS:PR00742	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF118
SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI000294DC3D	SEG:seg	:	:

Description

Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG401009228]

Coordinates

chr11:-:8571398..8576848

Molecular Weight (calculated)

81504.7 Da

IEP (calculated)

8.349

GRAVY (calculated)

-0.406

Length

724 amino acids

Sequence
(BLAST)

001: MWPSLISKAK QGGIDVIETY VFWNLHEPQP GQYDFSGRRD IVAFIKQIQA QGLYACLRIG PYIEAEWTYG GFPFWLHDVP GIVYRSDNEP FKIENEYQNK
101: EKSFGEKGPP YVLWAAKMAV ELETGVPWIM CKQDDAPDPI INTCNGRACG ETFKGPNSPN KPSIWTENWT SFYQVYGENA KYRSAEEMAY QVALFIARKN
201: GTYINYYMYH GGTNFGRSAA EFMITGYYDQ APLDEYGLIS QPKWGHFKEL HAAVKLCSEN ILSTFPTMHS LGPLQEAYVY GEDSGTKCSA LLVNTDHSNR
301: NVTVQFRNLT YQLPPKSISI LHDCKTVVFN TAKVSTQFNT RTPTTVFKFD RAEKWEQFHE IIPRFDATTL RSQTLLEQTN TTKDVSDYLW YTTSLEQESE
401: EQQVKLSVKS LGHVLHAFVN GHLVGYGHGQ FRKTSFLVES TISLNKGKNE ISFLSATIGL PNSGAFLERR SLGVHSVMIQ NDNRGLKNFT DFSWGYQVGL
501: LGEKLQIYSS ERTKSVNWSK LGSSKLQLTW YKSIFDAPKG DDPVTLNLGS MGKGEAWVNG QSIGRFWLSF HTPQGVPSQT WYNVPRSFLK PKDNVLVLFE
601: EEIGNPLGIT IDTISITKVC GHVTNSNPPP LNSWRKHGRI RPKVQLSCPP RRKISKILFA SFGNPIGDCD DYDIGLCHSS NSKAIVEKAC LGKSKCTIAH
701: SSKKFGGDPC PGISKSLLVD VQCK

Best Arabidopsis Sequence Match ( AT1G77410.1 )
(BLAST)

001: MTTFQYSLVF LVLMAVIVAG DVANVTYDGR SLIIDGEHKI LFSGSIHYTR STPQMWPSLI AKAKSGGIDV VDTYVFWNVH EPQQGQFDFS GSRDIVKFIK
101: EVKNHGLYVC LRIGPFIQGE WSYGGLPFWL HNVQGIVFRT DNEPFKYHMK RYAKMIVKLM KSENLYASQG GPIILSQIEN EYGMVGRAFR QEGKSYVKWT
201: AKLAVELDTG VPWVMCKQDD APDPLVNACN GRQCGETFKG PNSPNKPAIW TENWTSFYQT YGEEPLIRSA EDIAFHVALF IAKNGSFVNY YMYHGGTNFG
301: RNASQFVITS YYDQAPLDEY GLLRQPKWGH LKELHAAVKL CEEPLLSGLQ TTISLGKLQT AFVFGKKANL CAAILVNQDK CESTVQFRNS SYRLSPKSVS
401: VLPDCKNVAF NTAKVNAQYN TRTRKARQNL SSPQMWEEFT ETVPSFSETS IRSESLLEHM NTTQDTSDYL WQTTRFQQSE GAPSVLKVNH LGHALHAFVN
501: GRFIGSMHGT FKAHRFLLEK NMSLNNGTNN LALLSVMVGL PNSGAHLERR VVGSRSVKIW NGRYQLYFNN YSWGYQVGLK GEKFHVYTED GSAKVQWKQY
601: RDSKSQPLTW YKASFDTPEG EDPVALNLGS MGKGEAWVNG QSIGRYWVSF HTYKGNPSQI WYHIPRSFLK PNSNLLVILE EEREGNPLGI TIDTVSVTEV
701: CGHVSNTNPH PVISPRKKGL NRKNLTYRYD RKPKVQLQCP TGRKISKILF ASFGTPNGSC GSYSIGSCHS PNSLAVVQKA CLKKSRCSVP VWSKTFGGDS
801: CPHTVKSLLV RAQCS

Arabidopsis Description

BGAL16beta-galactosidase 16 [Source:TAIR;Acc:AT1G77410]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.