Factsheet for PGSC0003DMT400079498

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 1
golgi 6
extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g110000.2.1	Tomato	nucleus	97.94	97.94
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	51.72	69.5
VIT_03s0038g00150.t01	Wine grape	vacuole	77.44	65.24
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	59.7	64.78
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	71.94	61.89
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	71.94	61.31
EER92805	Sorghum	vacuole	70.29	60.69
GSMUA_Achr4P13580_001	Banana	golgi, vacuole	72.21	60.48
Os03t0165400-01	Rice	vacuole	69.74	60.29
TraesCS4A01G022500.2	Wheat	golgi, vacuole	68.91	59.36
GSMUA_Achr4P06620_001	Banana	cytosol	52.54	59.32
TraesCS4B01G280900.1	Wheat	golgi, vacuole	68.91	59.29
Zm00001d048440_P003	Maize	vacuole	70.7	59.15
HORVU4Hr1G074280.4	Barley	vacuole	68.78	59.03
TraesCS4D01G279400.4	Wheat	vacuole	68.78	58.96
PGSC0003DMT400083896	Potato	extracellular	66.02	57.48
PGSC0003DMT400006654	Potato	golgi, vacuole	65.75	57.04
PGSC0003DMT400012359	Potato	golgi, vacuole	65.75	56.9
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	70.56	55.88
PGSC0003DMT400023852	Potato	extracellular	42.37	48.97
PGSC0003DMT400020941	Potato	extracellular	55.3	47.18
PGSC0003DMT400039333	Potato	extracellular, golgi	52.13	45.33
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	26.96	43.85
PGSC0003DMT400023851	Potato	nucleus, peroxisome, vacuole	42.64	42.82
PGSC0003DMT400059880	Potato	cytosol	44.98	42.47
PGSC0003DMT400057597	Potato	golgi, vacuole	39.89	41.85
PGSC0003DMT400067956	Potato	extracellular	49.93	40.7
PGSC0003DMT400015841	Potato	endoplasmic reticulum, golgi, vacuole	43.05	38.69
PGSC0003DMT400031178	Potato	vacuole	43.6	38.24

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	EntrezGene:102587549
Gene3D:2.60.120.260	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf
InterPro:Gly_Hdrlase_35_cat	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	UniProt:M1D1X9	PFAM:PF01301
EnsemblPlantsGene:PGSC0003DMG400030954	PGSC:PGSC0003DMG400030954	EnsemblPlants:PGSC0003DMT400079498	PRINTS:PR00742	PANTHER:PTHR23421	PANTHER:PTHR23421:SF71
SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000296F4FA	RefSeq:XP_006362025.1

Description

Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400030954]

Coordinates

chr1:+:86383698..86389927

Molecular Weight (calculated)

81490.1 Da

IEP (calculated)

8.228

GRAVY (calculated)

-0.234

Length

727 amino acids

Sequence
(BLAST)

001: MVINTKWFLI FFVLIFGSKI CYCSVTYDKK SLIINGQRKI LFSGSVHYPR STPDMWEGII QKAKDGGLDV IETYVFWNLH EPSPGNYNFE GRNDLVRFIK
101: LIQKAGLYMH LRIGPYICGE WNFGGFPVWL KYVPGISFRT DNEPFKREMQ RFTTKIVQMM KNEKLFQTQG GHIILSQIEN EYGLEIKQYG APGHAYMTWA
201: AKMAVEMGTG VPWVMCKEDD APDPVINTCN GFYCDYFSPN KPNKPTIWTE AWSGWFDDFG GPVHHRPVED LAFAVARFIQ KGGSLVNYYM YHGGTNFGRT
301: AGGPFITTSY DYDAPIDEYG LIRQPKYDHL KELHKAVKLC EPALISADPT VTVLGNYEQA HVFSSGSGHC AAFLANYHLS STARVTFRHQ HYDLPPWSIS
401: ILPDCKNVVY NTARVGVKTS TAQMLPTNVQ LRTWETFSED VSTIDVDSKL TVVGLLEQLN VTRDMSDYLW YTTSVEINSA ESFLHQGQHL TLTVQSAGHA
501: LHVYINGRLS GSVYGNRENR RVTFTGGVNL HAGINRISLL SVAVGLPNNG AHYETWSAGV LGPVVLHGLD KGQRDLSWQK WSYQVGLRGE TMNLASNAIS
601: AAEWVGGSLI ARQQQPLTWY KVYFNAPGGS DPLALDMGSM GKGQVWVNGQ SIGRYWTAYA TGNCSPCTYA ATYRQGKCQS GCGQPTQRWY HVPRSWLKPT
701: GNLLVVFEEI GGDASKISLV KRSITYV

Best Arabidopsis Sequence Match ( AT4G36360.1 )
(BLAST)

001: MREMGTGDSA SRLILWFCLG FLILGVGFVQ CGVTYDRKAL LINGQRRILF SGSIHYPRST PDMWEDLIQK AKDGGIDVIE TYVFWNLHEP SPGKYDFEGR
101: NDLVRFVKTI HKAGLYAHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN EPFKRAMKGF TERIVELMKS ENLFESQGGP IILSQIENEY GRQGQLLGAE
201: GHNYMTWAAK MAIATETGVP WVMCKEDDAP DPVINTCNGF YCDSFAPNKP YKPLIWTEAW SGWFTEFGGP MHHRPVQDLA FGVARFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVTTSYDY DAPIDEYGLI RQPKYGHLKE LHRAIKMCEK ALVSADPVVT SIGNKQQAHV YSAESGDCSA FLANYDTESA ARVLFNNVHY
401: NLPPWSISIL PDCRNAVFNT AKVGVQTSQM EMLPTDTKNF QWESYLEDLS SLDDSSTFTT HGLLEQINVT RDTSDYLWYM TSVDIGDSES FLHGGELPTL
501: IIQSTGHAVH IFVNGQLSGS AFGTRQNRRF TYQGKINLHS GTNRIALLSV AVGLPNVGGH FESWNTGILG PVALHGLSQG KMDLSWQKWT YQVGLKGEAM
601: NLAFPTNTPS IGWMDASLTV QKPQPLTWHK TYFDAPEGNE PLALDMEGMG KGQIWVNGES IGRYWTAFAT GDCSHCSYTG TYKPNKCQTG CGQPTQRWYH
701: VPRAWLKPSQ NLLVIFEELG GNPSTVSLVK RSVSGVCAEV SEYHPNIKNW QIESYGKGQT FHRPKVHLKC SPGQAIASIK FASFGTPLGT CGSYQQGECH
801: AATSYAILER KCVGKARCAV TISNSNFGKD PCPNVLKRLT VEAVCAPETS VSTWRP

Arabidopsis Description

BGAL3Beta-galactosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV9]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.