Factsheet for GSMUA_Achr4P13580_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 7
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36360.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06620_001	Banana	cytosol	66.36	89.44
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	85.71	87.22
EER92805	Sorghum	vacuole	76.84	79.22
Os03t0165400-01	Rice	vacuole	75.58	78.0
TraesCS4B01G280900.1	Wheat	golgi, vacuole	75.46	77.51
HORVU4Hr1G074280.4	Barley	vacuole	75.46	77.33
TraesCS4A01G022500.2	Wheat	golgi, vacuole	75.0	77.13
TraesCS4D01G279400.4	Wheat	vacuole	75.35	77.12
Zm00001d048440_P003	Maize	vacuole	76.84	76.75
VIT_04s0023g02690.t01	Wine grape	extracellular, golgi	72.81	74.79
KRH76716	Soybean	nucleus	72.81	74.44
VIT_18s0001g13230.t01	Wine grape	extracellular, golgi	73.16	74.36
KRH15132	Soybean	mitochondrion, nucleus	62.56	74.18
KRH28740	Soybean	nucleus	72.47	73.74
KRH08131	Soybean	nucleus	72.0	73.7
KRH69834	Soybean	extracellular, golgi	71.89	73.58
KRH05876	Soybean	nucleus	61.98	73.5
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	45.28	72.64
Bra036334.1-P	Field mustard	golgi, vacuole	61.06	72.6
VIT_03s0038g00150.t01	Wine grape	vacuole	72.12	72.54
CDY47949	Canola	golgi, vacuole	60.94	72.47
CDY36028	Canola	plastid	59.33	72.33
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	76.5	72.33
KRH61101	Soybean	nucleus	61.29	72.28
Solyc01g110000.2.1	Tomato	nucleus	60.48	72.21
PGSC0003DMT400079498	Potato	vacuole	60.48	72.21
CDY53959	Canola	golgi, vacuole	60.71	72.19
Bra014036.1-P	Field mustard	plastid	59.1	72.05
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	70.05	71.95
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	70.05	71.95
AT1G45130.1	Thale cress	golgi, vacuole	60.6	71.86
CDX69219	Canola	vacuole	67.97	71.6
CDX75569	Canola	golgi, vacuole	67.97	71.34
Bra011677.1-P	Field mustard	golgi, vacuole	70.28	71.26
CDY59693	Canola	vacuole	69.59	70.56
Solyc04g080840.1.1	Tomato	extracellular, golgi	59.68	70.48
AT4G36360.1	Thale cress	endoplasmic reticulum, golgi, vacuole	69.24	70.21
KRH51779	Soybean	vacuole	56.34	68.58
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	55.76	65.94
GSMUA_Achr6P35850_001	Banana	golgi, vacuole	62.56	65.9
GSMUA_Achr7P08970_001	Banana	vacuole	55.41	65.89
GSMUA_Achr7P08940_001	Banana	vacuole	55.07	65.3
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	55.18	65.08
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	54.72	64.54
CDY59691	Canola	cytosol, nucleus, vacuole	25.46	62.78
CDY59725	Canola	cytosol	21.77	60.58
Bra017756.1-P	Field mustard	cytosol, nucleus, vacuole	20.74	59.21
GSMUA_Achr2P16780_001	Banana	plastid	55.18	56.96
GSMUA_Achr4P20830_001	Banana	golgi, vacuole	54.03	53.85
GSMUA_Achr4P22060_001	Banana	golgi, vacuole	52.07	53.81
GSMUA_Achr6P18730_001	Banana	golgi, vacuole	45.85	52.37
GSMUA_Achr4P25980_001	Banana	extracellular, golgi, vacuole	34.91	48.95
GSMUA_Achr2P21230_001	Banana	extracellular, golgi, vacuole	49.08	48.52
GSMUA_Achr11P...	Banana	golgi, vacuole	45.62	48.47
GSMUA_Achr4P26030_001	Banana	cytosol, peroxisome, vacuole	29.49	48.3
GSMUA_Achr5P11870_001	Banana	extracellular, golgi	42.63	47.13
GSMUA_AchrUn_...	Banana	extracellular, vacuole	44.12	46.94
GSMUA_Achr2P21790_001	Banana	golgi, vacuole	44.93	46.37
GSMUA_Achr1P26480_001	Banana	vacuole	43.09	46.0
GSMUA_Achr1P14790_001	Banana	vacuole	43.09	45.33
GSMUA_Achr4P05130_001	Banana	golgi, plastid, vacuole	43.43	44.93
GSMUA_Achr5P11850_001	Banana	extracellular, golgi	42.97	41.54

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
GO:GO:0030246	EnsemblPlantsGene:GSMUA_Achr4G13580_001	EnsemblPlants:GSMUA_Achr4P13580_001	EnsemblPlants:GSMUA_Achr4T13580_001	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat
InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	UniProt:M0SNM3
PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF79
SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0002955576	SEG:seg	:

Description

Beta-galactosidase 5 [Source:GMGC_GENE;Acc:GSMUA_Achr4G13580_001]

Coordinates

chr4:+:10134906..10141889

Molecular Weight (calculated)

96303.4 Da

IEP (calculated)

6.830

GRAVY (calculated)

-0.242

Length

868 amino acids

Sequence
(BLAST)

001: MGSQSSPHFL SSLLLLLLFL LPVAQCGVTY DRKAIIINGQ RKILISGSIH YPRSTPDMWE GLIQKAKDGG LDVIQTYVFW NGHEPSPGTY NFEGRYDLVR
101: FIKTVQKVGL YVHLRVGPYV CAEWNFGGFP VWLKYVPGIS FRTDNEPFKM AMQGFTQKIV EMMKSESLFA SQGGPIILSQ AFPWMQIENE YGPESKALGS
201: AGRSYVNWAA DMAVGLGTGV PWVMCKEEDA PDPVINTCNG FYCDSFTPNK PYKPMMWTEA WSGWFTEFGG TIRHRPAEDL AFAVARFIQN GGSFINYYMY
301: HGGTNFGRTA GGPFITTSYD YDAPIDEYGL IREPKYGHLK ELHKAIKLCE QALVSADPTV TSLGSLQQAH VFSSESGGCA AFLSNHEPNS YAKIMFNNMH
401: YNLPPWSISI LPDCRNVVFN TAKASHFASN STNFLSNIGV QTSQMQMYPT NTQSLMWERY DEEVASLEEN SLITATGLLE QINVTRDTSD YLWYITSVDI
501: SSAEEFLKGG KLPVLTVRSA GHALHIFVNG QLSGSAYGTR ENKRIKFSGN INLRAGTNRI ALLSVAVGLP NSGVHYELWS TGVLGPVVLH ELDEGSRDLT
601: WQTWSYQVGL KGEDMNLNSL EGASSVEWMQ GSLVQNQQPL TWYRAYFDAP DGDEPLALDM ASMGKGHVWI NGQSIGRYWT AYAPKENCKS CSYTGTYRSP
701: KCQSGCGQPT QRWYHVPRSW LQPTRNLLVV FEELGGDATK IALMMRSVSS VCADVSEWHP TIKNWHIESY GEPEEYRKPK VHLRCAPGQS ISAIKFASYG
801: TPLGTCGNFQ QGACHSPNSH TILEKKCIGK EKCVVAISQA NFGGDPCPNV MKKVAVEAVC SSAVQPIT

Best Arabidopsis Sequence Match ( AT4G36360.1 )
(BLAST)

001: MREMGTGDSA SRLILWFCLG FLILGVGFVQ CGVTYDRKAL LINGQRRILF SGSIHYPRST PDMWEDLIQK AKDGGIDVIE TYVFWNLHEP SPGKYDFEGR
101: NDLVRFVKTI HKAGLYAHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN EPFKRAMKGF TERIVELMKS ENLFESQGGP IILSQIENEY GRQGQLLGAE
201: GHNYMTWAAK MAIATETGVP WVMCKEDDAP DPVINTCNGF YCDSFAPNKP YKPLIWTEAW SGWFTEFGGP MHHRPVQDLA FGVARFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVTTSYDY DAPIDEYGLI RQPKYGHLKE LHRAIKMCEK ALVSADPVVT SIGNKQQAHV YSAESGDCSA FLANYDTESA ARVLFNNVHY
401: NLPPWSISIL PDCRNAVFNT AKVGVQTSQM EMLPTDTKNF QWESYLEDLS SLDDSSTFTT HGLLEQINVT RDTSDYLWYM TSVDIGDSES FLHGGELPTL
501: IIQSTGHAVH IFVNGQLSGS AFGTRQNRRF TYQGKINLHS GTNRIALLSV AVGLPNVGGH FESWNTGILG PVALHGLSQG KMDLSWQKWT YQVGLKGEAM
601: NLAFPTNTPS IGWMDASLTV QKPQPLTWHK TYFDAPEGNE PLALDMEGMG KGQIWVNGES IGRYWTAFAT GDCSHCSYTG TYKPNKCQTG CGQPTQRWYH
701: VPRAWLKPSQ NLLVIFEELG GNPSTVSLVK RSVSGVCAEV SEYHPNIKNW QIESYGKGQT FHRPKVHLKC SPGQAIASIK FASFGTPLGT CGSYQQGECH
801: AATSYAILER KCVGKARCAV TISNSNFGKD PCPNVLKRLT VEAVCAPETS VSTWRP

Arabidopsis Description

BGAL3Beta-galactosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV9]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.