Factsheet for TraesCS4D01G279400.4

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36360.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G36360.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G36360.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G280900.1	Wheat	golgi, vacuole	98.47	98.82
TraesCS4A01G022500.2	Wheat	golgi, vacuole	98.23	98.7
HORVU4Hr1G074280.4	Barley	vacuole	96.58	96.69
EER92805	Sorghum	vacuole	85.73	86.34
Os03t0165400-01	Rice	vacuole	84.79	85.49
Zm00001d048440_P003	Maize	vacuole	85.61	83.54
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	85.85	79.3
GSMUA_Achr4P06620_001	Banana	cytosol	58.49	77.02
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	75.83	75.38
GSMUA_Achr4P13580_001	Banana	golgi, vacuole	77.12	75.35
KRH76716	Soybean	nucleus	70.4	70.32
VIT_04s0023g02690.t01	Wine grape	extracellular, golgi	69.93	70.18
KRH08131	Soybean	nucleus	69.93	69.93
KRH69834	Soybean	extracellular, golgi	69.81	69.81
KRH28740	Soybean	nucleus	70.17	69.75
KRH15132	Soybean	mitochondrion, nucleus	59.67	69.13
PGSC0003DMT400079498	Potato	vacuole	58.96	68.78
KRH05876	Soybean	nucleus	59.2	68.58
CDY36028	Canola	plastid	57.55	68.54
VIT_18s0001g13230.t01	Wine grape	extracellular, golgi	68.99	68.5
Bra036334.1-P	Field mustard	golgi, vacuole	58.96	68.49
KRH61101	Soybean	nucleus	59.43	68.48
AT1G45130.1	Thale cress	golgi, vacuole	59.08	68.44
Bra014036.1-P	Field mustard	plastid	57.43	68.4
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	68.04	68.28
VIT_03s0038g00150.t01	Wine grape	vacuole	69.46	68.25
Solyc01g110000.2.1	Tomato	nucleus	58.49	68.23
Bra011677.1-P	Field mustard	golgi, vacuole	68.87	68.22
CDY47949	Canola	golgi, vacuole	58.73	68.22
CDY53959	Canola	golgi, vacuole	58.73	68.22
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	67.81	68.05
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	43.4	68.02
CDX69219	Canola	vacuole	65.92	67.84
Solyc04g080840.1.1	Tomato	extracellular, golgi	58.73	67.76
CDX75569	Canola	golgi, vacuole	65.92	67.59
AT4G36360.1	Thale cress	endoplasmic reticulum, golgi, vacuole	67.92	67.29
CDY59693	Canola	vacuole	67.57	66.94
KRH51779	Soybean	vacuole	54.95	65.36
TraesCS3D01G211500.2	Wheat	golgi, vacuole	62.97	63.95
TraesCS7D01G359500.1	Wheat	golgi	52.83	62.48
TraesCS6D01G172400.1	Wheat	golgi, vacuole	51.53	60.28
CDY59725	Canola	cytosol	22.17	60.26
CDY59691	Canola	cytosol, nucleus, vacuole	24.88	59.94
Bra017756.1-P	Field mustard	cytosol, nucleus, vacuole	20.75	57.89
TraesCS4D01G220800.2	Wheat	vacuole	53.3	52.13
TraesCS3D01G379200.1	Wheat	vacuole	49.76	50.0
TraesCS3D01G379300.2	Wheat	vacuole	49.65	49.88
TraesCS5D01G148400.1	Wheat	unclear	50.24	46.71
TraesCS1D01G267600.2	Wheat	endoplasmic reticulum, extracellular, vacuole	43.99	45.49
TraesCS1D01G024200.1	Wheat	vacuole	41.98	42.94
TraesCS3D01G379100.3	Wheat	vacuole	42.22	42.17
TraesCS7D01G272600.1	Wheat	golgi, vacuole	41.39	41.79
TraesCS5D01G336700.2	Wheat	vacuole	36.08	36.47

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0030246
InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922
InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182
PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF51	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4D01G279400	EnsemblPlants:TraesCS4D01G279400.4	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:-:450510150..450515646

Molecular Weight (calculated)

92807.8 Da

IEP (calculated)

6.552

GRAVY (calculated)

-0.247

Length

848 amino acids

Sequence
(BLAST)

001: MARRWAAAAL LCLAVLAAAA AASVLAAAVE GAVTYDRKAV LISGERRILF SGSIHYPRST PEMWEGLIQK AKDGGLDVIQ TYVFWNGHEP TPGNYNFEGR
101: YDLVRFIKTA QKAGLFVHLR IGPYICGEWN FGGFPVWLKY VPGISFRTDN EPFKAAMQGF TEKIVGMMKS EELFASQGGP IILSQIENEY GPEEKEFGAA
201: GKSYSDWAAK MAVGLDTGVP WVMCKQEDAP DPVINACNGF YCDAFTPNSP SKPTMWTEAW TGWFTEFGGT IRKRPVEDLS FAVARFVQKG GSFINYYMYH
301: GGTNFGRTAG GPFITTSYDY DAPLDEYGLA REPKYGHLKE LHRAIKLCEP ALVSVDPTVT SLGSMQEAHV YRSPSGCAAF LANYNSNSHA KVVFDNEHYS
401: LPPWSISILP DCRTVVYNTA TVGVQTSQMQ MWSNGASSMM WERYDEEVGS LAAAPLLTTT GLLEQLNVTR DTSDYLWYMT SVDVSPSEKF LQGGKPLSLS
501: VQSAGHALHI FINGQLQGSA SGTREDKRIS YKGNVNLRAG TNEISLLSVA CGLPNIGVHY ETWNTGVNGP VVLHGLDEGS RDLTWQTWTY QVGLKGEQMN
601: LNSLEGASSV EWMQGSLIAQ NQMPLAWYRA YFDTPSGDEP LALDMGSMGK GQIWINGQSI GRYSLAYATG DCKDYSYTGS FRATKCQAGC GQPTQRWYHV
701: PKSWLQPSRN LLVVFEELGG DTSKISLVKR SVSSVCADVS EFHPSIKNWQ TESSGEAKPE LRRSKVHLRC APGQSISAIK FASFGTPSGT CGSFEQGECH
801: STKSQTVLEK CIGKQRCAVA ISPDNFGGDP CPNVMKRVAV EAVCSPGT

Best Arabidopsis Sequence Match ( AT4G36360.2 )
(BLAST)

001: MREMGTGDSA SRLILWFCLG FLILGVGFVQ CGVTYDRKAL LINGQRRILF SGSIHYPRST PDMWEDLIQK AKDGGIDVIE TYVFWNLHEP SPGKYDFEGR
101: NDLVRFVKTI HKAGLYAHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN EPFKRAMKGF TERIVELMKS ENLFESQGGP IILSQIENEY GRQGQLLGAE
201: GHNYMTWAAK MAIATETGVP WVMCKEDDAP DPVINTCNGF YCDSFAPNKP YKPLIWTEAW SGWFTEFGGP MHHRPVQDLA FGVARFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVTTSYDY DAPIDEYGLI RQPKYGHLKE LHRAIKMCEK ALVSADPVVT SIGNKQQAHV YSAESGDCSA FLANYDTESA ARVLFNNVHY
401: NLPPWSISIL PDCRNAVFNT AKVGVQTSQM EMLPTDTKNF QWESYLEDLS SLDDSSTFTT HGLLEQINVT RDTSDYLWYM TSVDIGDSES FLHGGELPTL
501: IIQSTGHAVH IFVNGQLSGS AFGTRQNRRF TYQGKINLHS GTNRIALLSV AVGLPNVGGH FESWNTGILG PVALHGLSQG KMDLSWQKWT YQVGLKGEAM
601: NLAFPTNTPS IGWMDASLTV QKPQPLTWHK TYFDAPEGNE PLALDMEGMG KGQIWVNGES IGRYWTAFAT GDCSHCSYTG TYKPNKCQTG CGQPTQRWYH
701: VPRAWLKPSQ NLLVIFEELG GNPSTVSLVK RSVSGVCAEV SEYHPNIKNW QIESYGKGQT FHRPKVHLKC SPGQAIASIK FASFGTPLGT CGSYQQGECH
801: AATSYAILER CVGKARCAVT ISNSNFGKDP CPNVLKRLTV EAVCAPETSV STWRP

Arabidopsis Description

BGAL3Beta-galactosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV9]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.