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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: vacuole

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 5
  • golgi 7
Predictors GFP MS/MS Papers
Winner Takes All:vacuole
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:golgi
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G36360.1 Os10t0114400-01 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER92805 Sorghum vacuole 88.94 88.84
Zm00001d048440_P003 Maize vacuole 88.7 85.85
TraesCS4A01G022500.2 Wheat golgi, vacuole 85.85 85.55
TraesCS4B01G280900.1 Wheat golgi, vacuole 85.73 85.33
TraesCS4D01G279400.4 Wheat vacuole 85.49 84.79
HORVU4Hr1G074280.4 Barley vacuole 85.14 84.53
Zm00001d027803_P002 Maize golgi, plasma membrane, vacuole 88.58 81.15
GSMUA_Achr4P06620_001 Banana cytosol 59.1 77.17
GSMUA_Achr9P21610_001 Banana extracellular, golgi 76.69 75.62
GSMUA_Achr4P13580_001 Banana golgi, vacuole 78.0 75.58
KRH76716 Soybean nucleus 71.58 70.91
KRH15132 Soybean mitochondrion, nucleus 61.71 70.9
KRH05876 Soybean nucleus 61.47 70.63
VIT_18s0001g13230.t01 Wine grape extracellular, golgi 71.58 70.49
KRH28740 Soybean nucleus 71.22 70.22
VIT_04s0023g02690.t01 Wine grape extracellular, golgi 70.15 69.82
KRH08131 Soybean nucleus 70.39 69.81
PGSC0003DMT400079498 Potato vacuole 60.29 69.74
KRH69834 Soybean extracellular, golgi 70.15 69.58
CDY36028 Canola plastid 58.86 69.52
KRH61101 Soybean nucleus 60.76 69.43
AT1G45130.1 Thale cress golgi, vacuole 60.4 69.4
Bra014036.1-P Field mustard plastid 58.74 69.38
Solyc02g084720.2.1 Tomato endoplasmic reticulum, golgi, vacuole 69.56 69.23
Solyc01g110000.2.1 Tomato nucleus 59.81 69.19
PGSC0003DMT400009496 Potato nucleus, peroxisome, vacuole 44.47 69.13
PGSC0003DMT400009096 Potato endoplasmic reticulum, golgi, vacuole 69.32 68.99
Bra036334.1-P Field mustard golgi, vacuole 59.81 68.9
CDY53959 Canola golgi, vacuole 59.69 68.77
CDY47949 Canola golgi, vacuole 59.57 68.63
Solyc04g080840.1.1 Tomato extracellular, golgi 59.81 68.44
VIT_03s0038g00150.t01 Wine grape vacuole 70.04 68.25
Bra011677.1-P Field mustard golgi, vacuole 69.08 67.87
AT4G36360.1 Thale cress endoplasmic reticulum, golgi, vacuole 68.85 67.64
CDX69219 Canola vacuole 66.23 67.6
CDX75569 Canola golgi, vacuole 66.47 67.59
CDY59693 Canola vacuole 68.25 67.06
KRH51779 Soybean vacuole 56.12 66.2
Os01t0580200-01 Rice golgi, vacuole 64.33 65.42
Os06t0573600-01 Rice plasma membrane, vacuole 52.68 61.96
Bra017756.1-P Field mustard cytosol, nucleus, vacuole 21.76 60.2
CDY59691 Canola cytosol, nucleus, vacuole 24.97 59.66
Os02t0219200-01 Rice peroxisome, vacuole 34.84 58.6
CDY59725 Canola cytosol 21.17 57.05
Os06t0628500-00 Rice extracellular, golgi, vacuole 18.31 52.38
Os03t0255100-01 Rice extracellular 53.15 46.76
Os05t0428100-00 Rice golgi, vacuole 44.47 46.12
Os01t0875500-01 Rice endoplasmic reticulum, mitochondrion, nucleus, vacuole 50.18 45.92
Os12t0429200-01 Rice plasma membrane 49.82 45.59
Os09t0539200-01 Rice vacuole 23.78 44.84
Os10t0340600-01 Rice extracellular, golgi, vacuole 42.33 43.0
Os10t0330600-01 Rice extracellular 41.5 42.15
Os08t0549200-01 Rice plasma membrane 42.45 42.1
Protein Annotations
KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23KEGG:00604+3.2.1.23Gene3D:2.60.120.260
Gene3D:2.60.120.740MapMan:21.3.2.2.2Gene3D:3.20.20.80EntrezGene:4331730ProteinID:ABF94149.1EMBL:AF499737
EMBL:AF508799EMBL:AK102192ProteinID:BAF10982.1ProteinID:BAS82468.1ProteinID:BAS82469.1GO:GO:0003674
GO:GO:0003824GO:GO:0004553GO:GO:0004565GO:GO:0005488GO:GO:0005575GO:GO:0005576
GO:GO:0005618GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005975
GO:GO:0008150GO:GO:0008152GO:GO:0016787GO:GO:0016798GO:GO:0030246GO:GO:0030312
GO:GO:0048046InterPro:Galactose-bd-like_sfInterPro:Gly_Hdrlase_35_catInterPro:Glyco_hydro_35_CSInterPro:Glycoside_Hdrlase_35InterPro:Glycoside_hydrolase_SF
InterPro:IPR000922InterPro:IPR008979InterPro:Lectin_gal-bd_domEnsemblPlantsGene:Os03g0165400EnsemblPlants:Os03t0165400-01PFAM:PF01301
PFAM:PF02140PRINTS:PR00742ScanProsite:PS01182PFscan:PS50228PANTHER:PTHR23421PANTHER:PTHR23421:SF51
UniProt:Q10RB4SUPFAM:SSF49785SUPFAM:SSF51445TMHMM:TMhelixUniParc:UPI0000DB4C44RefSeq:XP_015633043.1
SEG:seg:::::
Description
BETA-GALACTOSIDASE 1Similar to Relative to SR12 protein (Fragment). (Os03t0165400-01);Similar to Beta-galactosidase. (Os03t0165400-02)
Coordinates
chr3:-:3525115..3531350
Molecular Weight (calculated)
92177.2 Da
IEP (calculated)
6.238
GRAVY (calculated)
-0.213
Length
841 amino acids
Sequence
(BLAST)
001: MGRGCLAALL GGAVAVAVLV AVVHCAVTYD KKAVLVDGQR RILFSGSIHY PRSTPEMWDG LIEKAKDGGL DVIQTYVFWN GHEPTPGNYN FEGRYDLVRF
101: IKTVQKAGMF VHLRIGPYIC GEWNFGGFPV WLKYVPGISF RTDNEPFKNA MQGFTEKIVG MMKSENLFAS QGGPIILSQI ENEYGPEGKE FGAAGKAYIN
201: WAAKMAVGLD TGVPWVMCKE DDAPDPVINA CNGFYCDTFS PNKPYKPTMW TEAWSGWFTE FGGTIRQRPV EDLAFGVARF VQKGGSFINY YMYHGGTNFG
301: RTAGGPFITT SYDYDAPLDE YGLAREPKFG HLKELHRAVK LCEQPLVSAD PTVTTLGSMQ EAHVFRSSSG CAAFLANYNS NSYAKVIFNN ENYSLPPWSI
401: SILPDCKNVV FNTATVGVQT NQMQMWADGA SSMMWEKYDE EVDSLAAAPL LTSTGLLEQL NVTRDTSDYL WYITSVEVDP SEKFLQGGTP LSLTVQSAGH
501: ALHVFINGQL QGSAYGTRED RKISYSGNAN LRAGTNKVAL LSVACGLPNV GVHYETWNTG VVGPVVIHGL DEGSRDLTWQ TWSYQVGLKG EQMNLNSLEG
601: SGSVEWMQGS LVAQNQQPLA WYRAYFDTPS GDEPLALDMG SMGKGQIWIN GQSIGRYWTA YAEGDCKGCH YTGSYRAPKC QAGCGQPTQR WYHVPRSWLQ
701: PTRNLLVVFE ELGGDSSKIA LAKRTVSGVC ADVSEYHPNI KNWQIESYGE PEFHTAKVHL KCAPGQTISA IKFASFGTPL GTCGTFQQGE CHSINSNSVL
801: EKKCIGLQRC VVAISPSNFG GDPCPEVMKR VAVEAVCSTA A
Best Arabidopsis Sequence Match ( AT4G36360.1 )
(BLAST)
001: MREMGTGDSA SRLILWFCLG FLILGVGFVQ CGVTYDRKAL LINGQRRILF SGSIHYPRST PDMWEDLIQK AKDGGIDVIE TYVFWNLHEP SPGKYDFEGR
101: NDLVRFVKTI HKAGLYAHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN EPFKRAMKGF TERIVELMKS ENLFESQGGP IILSQIENEY GRQGQLLGAE
201: GHNYMTWAAK MAIATETGVP WVMCKEDDAP DPVINTCNGF YCDSFAPNKP YKPLIWTEAW SGWFTEFGGP MHHRPVQDLA FGVARFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVTTSYDY DAPIDEYGLI RQPKYGHLKE LHRAIKMCEK ALVSADPVVT SIGNKQQAHV YSAESGDCSA FLANYDTESA ARVLFNNVHY
401: NLPPWSISIL PDCRNAVFNT AKVGVQTSQM EMLPTDTKNF QWESYLEDLS SLDDSSTFTT HGLLEQINVT RDTSDYLWYM TSVDIGDSES FLHGGELPTL
501: IIQSTGHAVH IFVNGQLSGS AFGTRQNRRF TYQGKINLHS GTNRIALLSV AVGLPNVGGH FESWNTGILG PVALHGLSQG KMDLSWQKWT YQVGLKGEAM
601: NLAFPTNTPS IGWMDASLTV QKPQPLTWHK TYFDAPEGNE PLALDMEGMG KGQIWVNGES IGRYWTAFAT GDCSHCSYTG TYKPNKCQTG CGQPTQRWYH
701: VPRAWLKPSQ NLLVIFEELG GNPSTVSLVK RSVSGVCAEV SEYHPNIKNW QIESYGKGQT FHRPKVHLKC SPGQAIASIK FASFGTPLGT CGSYQQGECH
801: AATSYAILER KCVGKARCAV TISNSNFGKD PCPNVLKRLT VEAVCAPETS VSTWRP
Arabidopsis Description
BGAL3Beta-galactosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV9]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.