CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36360.1	CDY03088	AT2G01950.1	19000166
AT4G36360.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69219	Canola	vacuole	98.07	98.42
Bra011677.1-P	Field mustard	golgi, vacuole	99.52	96.14
CDY59693	Canola	vacuole	95.04	91.82
AT4G36360.1	Thale cress	endoplasmic reticulum, golgi, vacuole	94.2	91.0
CDY59691	Canola	cytosol, nucleus, vacuole	38.69	90.91
CDY59725	Canola	cytosol	30.59	81.09
VIT_04s0023g02690.t01	Wine grape	extracellular, golgi	77.75	76.09
KRH76716	Soybean	nucleus	77.75	75.74
KRH28740	Soybean	nucleus	77.63	75.26
KRH69834	Soybean	extracellular, golgi	76.9	75.0
KRH08131	Soybean	nucleus	76.42	74.53
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	75.21	73.61
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	74.85	73.25
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	70.86	68.7
GSMUA_Achr4P13580_001	Banana	golgi, vacuole	71.34	67.97
EER92805	Sorghum	vacuole	68.56	67.34
CDY53959	Canola	golgi, vacuole	59.01	66.85
GSMUA_Achr4P06620_001	Banana	cytosol	52.0	66.77
CDY47949	Canola	golgi, vacuole	58.77	66.58
Os03t0165400-01	Rice	vacuole	67.59	66.47
CDY36028	Canola	plastid	56.95	66.15
TraesCS4B01G280900.1	Wheat	golgi, vacuole	67.47	66.04
TraesCS4D01G279400.4	Wheat	vacuole	67.59	65.92
TraesCS4A01G022500.2	Wheat	golgi, vacuole	67.11	65.76
HORVU4Hr1G074280.4	Barley	vacuole	67.23	65.64
CDX88594	Canola	golgi, vacuole	25.76	65.54
Zm00001d048440_P003	Maize	vacuole	68.08	64.79
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	69.29	62.42
CDX97513	Canola	golgi, vacuole	62.88	61.9
CDY23637	Canola	golgi, vacuole	62.52	61.62
CDY51738	Canola	golgi, vacuole	62.39	61.5
CDX76255	Canola	extracellular	9.43	60.94
CDX94367	Canola	mitochondrion	52.24	60.67
CDY37486	Canola	golgi, vacuole	61.55	60.67
CDX95380	Canola	vacuole	52.24	59.42
CDY11899	Canola	golgi, vacuole	51.51	59.0
CDX76254	Canola	golgi, nucleus, vacuole	41.6	58.5
CDX92753	Canola	golgi, vacuole	50.3	58.43
CDY42755	Canola	vacuole	50.3	58.43
CDY32919	Canola	golgi, vacuole	50.79	58.17
CDX89360	Canola	mitochondrion	48.85	57.8
CDY20708	Canola	golgi, vacuole	50.3	57.62
CDX98327	Canola	golgi, vacuole	17.41	57.37
CDY70594	Canola	cytosol	27.33	54.33
CDY69471	Canola	cytosol	27.09	53.85
CDY15749	Canola	golgi, vacuole	54.9	53.79
CDY31204	Canola	golgi, vacuole	54.41	53.32
CDX83288	Canola	golgi, vacuole	54.29	53.14
CDY04567	Canola	golgi, vacuole	54.41	52.94
CDY43757	Canola	golgi, vacuole	44.26	49.39
CDY70160	Canola	vacuole	32.29	48.99
CDX84446	Canola	golgi, vacuole	43.65	48.72
CDY39845	Canola	vacuole	40.75	46.81
CDX84445	Canola	vacuole	40.27	46.25
CDX67790	Canola	vacuole	45.47	46.13
CDY65885	Canola	vacuole	45.71	46.04
CDY19166	Canola	golgi, vacuole	49.33	45.95
CDX93659	Canola	vacuole	45.22	45.72
CDY34975	Canola	golgi, plasma membrane, vacuole	43.53	45.69
CDY28339	Canola	vacuole	43.53	45.69
CDY23785	Canola	vacuole	49.21	45.58
CDY31349	Canola	vacuole	40.51	45.21
CDY69031	Canola	cytosol, plastid, vacuole	32.53	43.32
CDY43756	Canola	cytosol, nucleus, peroxisome	25.76	41.76
CDY31414	Canola	cytosol, golgi, mitochondrion, peroxisome	38.33	40.64
CDX75479	Canola	vacuole	41.11	40.24
CDX69103	Canola	vacuole	40.99	40.17
CDY32304	Canola	cytosol	42.56	39.91
CDY40650	Canola	vacuole	40.63	39.81
CDX72512	Canola	vacuole	40.63	39.81
CDX72747	Canola	vacuole	40.27	37.58
CDY70118	Canola	cytosol	26.6	37.04
CDY22419	Canola	cytosol	40.39	34.94
CDY53917	Canola	plastid	43.41	34.89
CDY02241	Canola	golgi, vacuole	40.99	34.28
CDX67763	Canola	golgi, plasma membrane, vacuole	31.2	33.46
CDX89744	Canola	vacuole	40.99	31.22

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:A0A078CHP8	EnsemblPlants:CDX75569	ProteinID:CDX75569
ProteinID:CDX75569.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0030246	EnsemblPlantsGene:GSBRNA2T00121475001	InterPro:Galactose-bd-like_sf
InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979
InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228
PANTHER:PTHR23421	PANTHER:PTHR23421:SF79	MetaCyc:PWY-6807	SUPFAM:SSF49785	SUPFAM:SSF51445	TMHMM:TMhelix
UniParc:UPI0004EDB0B5	SEG:seg	:	:	:	:

Description

BnaA01g01330D

Coordinates

chrLK031804:-:1710738..1715894

Molecular Weight (calculated)

92155.5 Da

IEP (calculated)

8.095

GRAVY (calculated)

-0.317

Length

827 amino acids

Sequence
(BLAST)

001: MLRMGTCDTA PRLILWLCLG FLILGVGFVQ CGVTYDRKAL LINGQRRILF SGSIHYPRST PDMWEGLIQK AKDGGVDVIE TYVFWNLHEP SPGKYDFEGR
101: NDLVRFVKTI HKAGLYAHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN EPFKRAMQGF TERIVQLMKS ENLYESQGGP IILSQIENEY GRQGQLLGAE
201: GHNYMTWAAK MAIATETGVP WVMCKEDDAP DPVINTCNGF YCDSFAPNKP YKPLIWTEAW SGWFTEFGGP MHHRPVQDLA FAVARFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVTTSYDY DAPIDEYGLI REPKYGHLKE LHRAIKMCEK ALVSTDPVVT SLGNKQQAHV YSSESGECSA FLANYDTESA ARVLFNNVHY
401: NLPPWSISIL PDCRNAVFNT AKVGVQTSQM EMLPTSTPNF QWQSYLEDLS SLDDSSTFTT QGLLEQINVT RDTSDYLWYM TSVDIGSTES FLHGGELPTL
501: IIQSTGHAVH IFVNGQLSGS AFGTRQNRRF TYRGKINLHS GANRIALLSV AVGLPNVGGH FESWNTGILG PVALHGLSQG KRDLSWQKWT YQVGLKGEAM
601: NLAYPTNTPS NGWMDASLVA QKSQPLTWHK AYFDAPEGNE PLALDMEGMG KGQVWVNGES IGRYWTAFAT GDCGHCSYTG TYKPNKCLSG CGQPTQRYYH
701: VPRSWLKPSQ NLLYHPNIKN WQIESYGKGQ TFRRPKVHLK CSHGQAISAI KFASFGTPLG KCGSYQQGEC HAATSYAILE RKCVGKARCA VTISNSNFGK
801: DPCPNVLKRL TVEAVCSPET SITSWKP

Best Arabidopsis Sequence Match ( AT4G36360.1 )
(BLAST)

001: MREMGTGDSA SRLILWFCLG FLILGVGFVQ CGVTYDRKAL LINGQRRILF SGSIHYPRST PDMWEDLIQK AKDGGIDVIE TYVFWNLHEP SPGKYDFEGR
101: NDLVRFVKTI HKAGLYAHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN EPFKRAMKGF TERIVELMKS ENLFESQGGP IILSQIENEY GRQGQLLGAE
201: GHNYMTWAAK MAIATETGVP WVMCKEDDAP DPVINTCNGF YCDSFAPNKP YKPLIWTEAW SGWFTEFGGP MHHRPVQDLA FGVARFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVTTSYDY DAPIDEYGLI RQPKYGHLKE LHRAIKMCEK ALVSADPVVT SIGNKQQAHV YSAESGDCSA FLANYDTESA ARVLFNNVHY
401: NLPPWSISIL PDCRNAVFNT AKVGVQTSQM EMLPTDTKNF QWESYLEDLS SLDDSSTFTT HGLLEQINVT RDTSDYLWYM TSVDIGDSES FLHGGELPTL
501: IIQSTGHAVH IFVNGQLSGS AFGTRQNRRF TYQGKINLHS GTNRIALLSV AVGLPNVGGH FESWNTGILG PVALHGLSQG KMDLSWQKWT YQVGLKGEAM
601: NLAFPTNTPS IGWMDASLTV QKPQPLTWHK TYFDAPEGNE PLALDMEGMG KGQIWVNGES IGRYWTAFAT GDCSHCSYTG TYKPNKCQTG CGQPTQRWYH
701: VPRAWLKPSQ NLLVIFEELG GNPSTVSLVK RSVSGVCAEV SEYHPNIKNW QIESYGKGQT FHRPKVHLKC SPGQAIASIK FASFGTPLGT CGSYQQGECH
801: AATSYAILER KCVGKARCAV TISNSNFGKD PCPNVLKRLT VEAVCAPETS VSTWRP

Arabidopsis Description

BGAL3Beta-galactosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV9]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.