CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89360	Canola	mitochondrion	91.85	93.56
CDX92753	Canola	golgi, vacuole	86.24	86.24
CDY42755	Canola	vacuole	86.1	86.1
AT4G26140.7	Thale cress	vacuole	90.45	85.52
CDX88594	Canola	golgi, vacuole	37.36	81.85
CDX76254	Canola	golgi, nucleus, vacuole	66.15	80.1
CDY11899	Canola	golgi, vacuole	80.9	79.78
CDX95380	Canola	vacuole	80.2	78.54
CDY70594	Canola	cytosol	45.79	78.37
CDY69471	Canola	cytosol	45.65	78.12
CDY32919	Canola	golgi, vacuole	78.23	77.15
CDY20708	Canola	golgi, vacuole	77.67	76.59
CDX76255	Canola	extracellular	12.78	71.09
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	65.87	70.0
KRH12385	Soybean	vacuole	70.65	69.76
KRH37385	Soybean	nucleus	70.37	69.49
Solyc12g008840.1.1	Tomato	extracellular	68.96	67.82
GSMUA_Achr7P08970_001	Banana	vacuole	69.1	67.4
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	68.12	66.08
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	68.12	65.9
GSMUA_Achr7P08940_001	Banana	vacuole	67.56	65.71
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	67.84	65.62
Os06t0573600-01	Rice	plasma membrane, vacuole	65.87	65.59
TraesCS7D01G359500.1	Wheat	golgi	65.45	64.99
TraesCS7A01G363600.1	Wheat	plasma membrane, vacuole	65.45	64.9
TraesCS7B01G264200.1	Wheat	plasma membrane, vacuole	65.31	64.76
Zm00001d046357_P001	Maize	extracellular	65.45	64.54
EER88554	Sorghum	golgi, vacuole	65.59	64.41
TraesCS6A01G185400.1	Wheat	golgi, vacuole	64.19	63.12
TraesCS6D01G172400.1	Wheat	golgi, vacuole	64.04	62.9
TraesCS6B01G214100.1	Wheat	golgi, vacuole	63.9	62.76
HORVU7Hr1G086690.2	Barley	plasma membrane, vacuole	65.31	62.25
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	72.61	61.62
EES06516	Sorghum	mitochondrion, plastid	63.9	61.49
KRH02714	Soybean	golgi, vacuole	72.33	61.38
CDY36028	Canola	plastid	60.96	60.96
Os02t0219200-01	Rice	peroxisome, vacuole	42.56	60.6
CDY23637	Canola	golgi, vacuole	71.07	60.31
VIT_11s0016g02200.t01	Wine grape	vacuole	70.79	60.29
CDX97513	Canola	golgi, vacuole	71.07	60.24
HORVU6Hr1G039490.6	Barley	plastid	64.47	60.08
CDY47949	Canola	golgi, vacuole	61.38	59.86
CDY53959	Canola	golgi, vacuole	61.24	59.73
CDY51738	Canola	golgi, vacuole	70.08	59.48
CDX98327	Canola	golgi, vacuole	20.93	59.36
CDY37486	Canola	golgi, vacuole	69.66	59.12
Zm00001d044290_P005	Maize	golgi, vacuole	66.99	57.47
OQU87043	Sorghum	golgi, vacuole	66.57	57.32
GSMUA_Achr2P16780_001	Banana	plastid	67.7	57.31
Os01t0580200-01	Rice	golgi, vacuole	66.29	57.07
TraesCS3D01G211500.2	Wheat	golgi, vacuole	66.15	56.41
HORVU3Hr1G050450.12	Barley	golgi, vacuole	65.73	56.32
GSMUA_Achr6P35850_001	Banana	golgi, vacuole	65.17	56.31
TraesCS3A01G208600.1	Wheat	plastid	65.87	56.17
TraesCS3B01G235100.1	Wheat	golgi, vacuole	65.45	55.67
Zm00001d053585_P002	Maize	plastid	63.76	54.76
CDX75569	Canola	golgi, vacuole	60.67	52.24
CDX69219	Canola	vacuole	59.97	51.82
CDY59693	Canola	vacuole	61.38	51.05
CDX84446	Canola	golgi, vacuole	52.95	50.88
CDY43757	Canola	golgi, vacuole	52.81	50.74
CDY70160	Canola	vacuole	38.2	49.91
CDY15749	Canola	golgi, vacuole	56.88	47.99
CDY31204	Canola	golgi, vacuole	55.9	47.16
CDY04567	Canola	golgi, vacuole	56.04	46.94
CDX83288	Canola	golgi, vacuole	55.48	46.75
CDY39845	Canola	vacuole	47.19	46.67
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	29.21	46.53
CDX84445	Canola	vacuole	46.35	45.83
CDY31349	Canola	vacuole	47.19	45.34
CDY65885	Canola	vacuole	49.3	42.75
CDY43756	Canola	cytosol, nucleus, peroxisome	30.48	42.55
CDY28339	Canola	vacuole	46.91	42.39
CDX93659	Canola	vacuole	48.6	42.3
CDY34975	Canola	golgi, plasma membrane, vacuole	46.77	42.26
CDY23785	Canola	vacuole	52.95	42.22
CDX67790	Canola	vacuole	48.17	42.09
CDY19166	Canola	golgi, vacuole	52.11	41.78
CDY59725	Canola	cytosol	17.98	41.03
CDY32304	Canola	cytosol	46.21	37.3
CDY69031	Canola	cytosol, plastid, vacuole	32.44	37.2
CDY31414	Canola	cytosol, golgi, mitochondrion, peroxisome	40.73	37.18
CDX75479	Canola	vacuole	43.68	36.8
CDX69103	Canola	vacuole	43.4	36.61
CDX72512	Canola	vacuole	42.84	36.14
CDY40650	Canola	vacuole	42.84	36.14
CDX72747	Canola	vacuole	42.98	34.54
CDX67763	Canola	golgi, plasma membrane, vacuole	36.66	33.85
CDY59691	Canola	cytosol, nucleus, vacuole	16.71	33.81
CDY22419	Canola	cytosol	43.12	32.11
CDY70118	Canola	cytosol	26.69	31.99
CDY53917	Canola	plastid	46.21	31.97
CDY02241	Canola	golgi, vacuole	42.84	30.84
CDX89744	Canola	vacuole	42.98	28.18

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:A0A078DZM0	EnsemblPlants:CDX94367	ProteinID:CDX94367	ProteinID:CDX94367.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00157486001	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35
InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	PFAM:PF01301	PRINTS:PR00742	ScanProsite:PS01182	PANTHER:PTHR23421
PANTHER:PTHR23421:SF63	MetaCyc:PWY-6807	SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI0004EDD008	:

Description

BnaC01g18170D

Coordinates

chrLK031881:+:544391..548884

Molecular Weight (calculated)

79531.4 Da

IEP (calculated)

7.874

GRAVY (calculated)

-0.365

Length

712 amino acids

Sequence
(BLAST)

001: MVTYDHKAVI INGQRRILLS GSIHYPRSTP EMWPDLIQKA KDGGLDVIQT YVFWNGHEPS PGQYYFEDRY DLVKFVKLVQ QAGLYVHLRI GPYVCAEWNF
101: GGFPVWLKYV PGMAFRTDNE PFKAAMQKFT EKIVGMMKEE KLFETQGGPI ILSQIENEYG PIEWEIGAPG KAYTKWAAQM AEGLSTGVPW IMCKQDDAPD
201: SIINTCNGYY CENFKPNSDN KPKMWTENWT GWFSEFGGAV PYRPAEDIAF SVARFIQNGG SFINYYMYHG GTNFDRTAGE FMATSYDYDA PLDEYGLPRE
301: PKYSHLTKLH KVIKLCEPAL VSVDPTVTSL GDKQEAHVFK SKSSCAAFLS NYNTSSAARV SFGGATYDLP PWSVSILPNC KTEYYNTAKV QVRTPSIQMK
401: MVPTNTQLSW GSYSEEIPSP NYNGTFAKDG LVEQISITRD KTDYFWYLTD ITISADEKFL KTGEDPLLTI GSAGHALSVF VNGQFVGTAY GSLEKPKLTF
501: SQKIKLAAGV NKLALLSIAV GLPNVGLHYE TRNTGVLGPV TLEGVNSGTW DMSKWKWSYK IGTKGEALSI HTVTGSSTVE WKEGTLVAKK QPLTWYKSTF
601: DTPAGNEPLA LDMNTMGKGQ VWINGQNIGR HWPAYKARGK CDRCSYAGTF NEKKCLSNCG EASQRWYHVP RSWLKPSANL IVVLEEWGGD PNGISLVRRT
701: SKKIASESIF SG

Best Arabidopsis Sequence Match ( AT4G26140.1 )
(BLAST)

001: MGLNFREKAW ILLGILCCSS LICSVKAIVT YDRKAVIING QRRILLSGSI HYPRSTPEMW PDLIQKAKDG GLDVIQTYVF WNGHEPSPGQ YYFEDRYDLV
101: KFIKVVQQAG LYVHLRIGPY VCAEWNFGGF PVWLKYVPGM VFRTDNEPFK AAMQKFTEKI VRMMKEEKLF ETQGGPIILS QIENEYGPIE WEIGAPGKAY
201: TKWVAEMAQG LSTGVPWIMC KQDDAPNSII NTCNGFYCEN FKPNSDNKPK MWTENWTGWF TEFGGAVPYR PAEDIALSVA RFIQNGGSFI NYYMYHGGTN
301: FDRTAGEFIA TSYDYDAPLD EYGLPREPKY SHLKRLHKVI KLCEPALVSA DPTVTSLGDK QEAHVFKSKS SCAAFLSNYN TSSAARVLFG GSTYDLPPWS
401: VSILPDCKTE YYNTAKVQVR TSSIHMKMVP TNTPFSWGSY NEEIPSANDN GTFSQDGLVE QISITRDKTD YFWYLTDITI SPDEKFLTGE DPLLTIGSAG
501: HALHVFVNGQ LAGTAYGSLE KPKLTFSQKI KLHAGVNKLA LLSTAAGLPN VGVHYETWNT GVLGPVTLNG VNSGTWDMTK WKWSYKIGTK GEALSVHTLA
601: GSSTVEWKEG SLVAKKQPLT WYKSTFDSPT GNEPLALDMN TMGKGQMWIN GQNIGRHWPA YTARGKCERC SYAGTFTEKK CLSNCGEASQ RWYHVPRSWL
701: KPTNNLVIVL EEWGGEPNGI SLVKRTAK

Arabidopsis Description

BGAL12beta-galactosidase 12 [Source:TAIR;Acc:AT4G26140]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.