Factsheet for Zm00001d044290_P005

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13750.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87043	Sorghum	golgi, vacuole	96.51	96.86
Os01t0580200-01	Rice	golgi, vacuole	91.33	91.66
HORVU3Hr1G050450.12	Barley	golgi, vacuole	89.4	89.29
TraesCS3A01G208600.1	Wheat	plastid	89.28	88.74
TraesCS3D01G211500.2	Wheat	golgi, vacuole	89.04	88.5
TraesCS3B01G235100.1	Wheat	golgi, vacuole	88.67	87.93
GSMUA_Achr6P35850_001	Banana	golgi, vacuole	76.27	76.82
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	71.33	70.39
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	56.51	70.0
Solyc03g121540.2.1	Tomato	nucleus	70.36	69.69
CDX88594	Canola	golgi, vacuole	27.23	69.54
PGSC0003DMT400083896	Potato	extracellular	69.88	69.46
PGSC0003DMT400006654	Potato	golgi, vacuole	70.0	69.33
Zm00001d046357_P001	Maize	extracellular	60.12	69.11
Solyc12g044880.1.1	Tomato	golgi, vacuole	69.52	69.1
KRH10007	Soybean	nucleus	69.64	68.81
Solyc06g062580.2.1	Tomato	nucleus	69.4	68.49
KRH23324	Soybean	vacuole	69.4	68.49
KRH44153	Soybean	nucleus	69.52	68.45
KRH47126	Soybean	nucleus	69.52	68.28
Solyc12g008840.1.1	Tomato	extracellular	59.52	68.23
PGSC0003DMT400012359	Potato	golgi, vacuole	69.04	68.21
Bra027403.1-P	Field mustard	golgi, vacuole	68.8	68.06
CDX97513	Canola	golgi, vacuole	68.8	67.98
CDY37486	Canola	golgi, vacuole	68.43	67.7
CDY51738	Canola	golgi, vacuole	68.31	67.58
CDY23637	Canola	golgi, vacuole	68.31	67.58
KRH12385	Soybean	vacuole	58.67	67.55
KRH37385	Soybean	nucleus	58.67	67.55
AT3G13750.1	Thale cress	golgi, vacuole	68.43	67.06
CDX94367	Canola	mitochondrion	57.47	66.99
Bra019644.1-P	Field mustard	golgi, plastid, vacuole	56.75	66.15
VIT_11s0016g02200.t01	Wine grape	vacuole	66.39	65.91
Bra021506.1-P	Field mustard	vacuole	68.31	65.85
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	66.39	65.67
CDX76255	Canola	extracellular	10.12	65.62
KRH02714	Soybean	golgi, vacuole	66.14	65.44
Bra013956.1-P	Field mustard	cytosol, mitochondrion, plastid, vacuole	57.35	65.03
CDX95380	Canola	vacuole	56.87	64.92
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	34.82	64.65
AT5G56870.1	Thale cress	vacuole	56.27	64.5
CDX76254	Canola	golgi, nucleus, vacuole	45.66	64.46
AT4G26140.7	Thale cress	vacuole	58.07	64.01
CDY11899	Canola	golgi, vacuole	55.54	63.85
CDX89360	Canola	mitochondrion	53.73	63.81
Bra006850.1-P	Field mustard	golgi, vacuole	55.3	63.57
CDX92753	Canola	golgi, vacuole	54.46	63.48
Bra019120.1-P	Field mustard	golgi, vacuole	54.34	63.34
CDY42755	Canola	vacuole	54.22	63.2
Bra035634.1-P	Field mustard	golgi, vacuole	54.82	63.02
CDY32919	Canola	golgi, vacuole	54.82	63.02
CDY20708	Canola	golgi, vacuole	54.7	62.88
Zm00001d048440_P003	Maize	vacuole	63.98	61.1
AT3G52840.2	Thale cress	golgi, vacuole	56.87	60.44
CDY70594	Canola	cytosol	30.0	59.86
CDY69471	Canola	cytosol	29.88	59.62
Zm00001d053585_P002	Maize	plastid	58.55	58.62
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	64.1	57.95
Zm00001d028474_P002	Maize	vacuole	53.98	49.89
Zm00001d041880_P001	Maize	extracellular, plasma membrane	50.36	45.53
Zm00001d042654_P005	Maize	endoplasmic reticulum, golgi, vacuole	46.99	45.03
Zm00001d042656_P001	Maize	golgi, vacuole	37.59	44.44
Zm00001d010212_P002	Maize	endoplasmic reticulum, extracellular, golgi	43.73	44.27
Zm00001d043393_P001	Maize	extracellular	43.37	43.8
Zm00001d053225_P005	Maize	golgi, vacuole	40.24	39.48
Zm00001d032022_P003	Maize	golgi, vacuole	39.52	38.59
Zm00001d006243_P005	Maize	endoplasmic reticulum, golgi, vacuole	37.23	35.48
Zm00001d022621_P005	Maize	vacuole	35.78	33.22

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	EntrezGene:100272556
Gene3D:2.60.120.260	Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	UniProt:A0A1D6NKE5	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0004565	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat
InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom
ProteinID:ONM40736.1	PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228
PANTHER:PTHR23421	PANTHER:PTHR23421:SF74	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0002219E78	EnsemblPlantsGene:Zm00001d044290	EnsemblPlants:Zm00001d044290_P005	EnsemblPlants:Zm00001d044290_T005	SEG:seg	:

Description

Beta-galactosidase 1

Coordinates

chr3:+:224362587..224370548

Molecular Weight (calculated)

91784.5 Da

IEP (calculated)

6.179

GRAVY (calculated)

-0.263

Length

830 amino acids

Sequence
(BLAST)

001: MAPAAPAGLA SVAVAVAVAV LAAAASAAVT YDRKAVVVNG QRRILMSGSI HYPRSVPEMW PDLIQKAKDG GLDVVQTYVF WNGHEPSRRQ YYFEGRYDLV
101: HFIKLVKQAG LYVHLRIGPY VCAEWNFGGF PVWLKYVPGI SFRTDNEPFK AEMQNFTTKI VDMMKSEGLF EWQGGPIILS QIENEFGPLE WDQGEPAKAY
201: ASWAANMAVA LNTSVPWVMC KEDDAPDPII NTCNGFYCDW FSPNKPHKPT MWTEAWTSWY TGFGIPVPHR PVEDLAYGVA KFIQKGGSFV NYYMYHGGTN
301: FGRTAGGPFI ATSYDYDAPI DEYGLLREPK WGHLKELHKA IKLCEPALVA GDPIVTSLGN AQQASVFRSS TDACVAFLEN KDKVSYARVS FNGMHYDLPP
401: WSISILPDCK TTVYNTASVG SQISQMKMEW AGGFTWQSYN EDINSLGDES FATVGLLEQI NVTRDNTDYL WYTTYVDIAQ DEQFLSNGKN PMLTVMSAGH
501: ALHIFVNGQL TGTVYGSVED PKLTYSGNVK LWSGSNTISC LSIAVGLPNV GEHFETWNAG ILGPVTLDGL NEGRRDLTWQ KWTYKVGLKG EALSLHSLSG
601: SSSVEWGEPV QKQPLSWYKA FFNAPDGDEP LALDMSSMGK GQIWINGQGI GRYWPGYKAS GTCGICDYRG EYDEKKCQTN CGDSSQRWYH VPRSWLNPTG
701: NLLVIFEEWG GDPTGISMVK RIAGSICADV SEWQPSMANW RTKGYEKAKV HLQCDHGRKM THIKFASFGT PQGSCGSYSE GGCHAHKSYD IFWKSCIGQE
801: RCGVSVVPDA FGGDPCPGTM KRAVVEAICG

Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)

001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA

Arabidopsis Description

BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.