Factsheet for Zm00001d046357_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

extracellular: 16602704
extracellular: 20408568
extracellular: 22192489
plasma membrane: 27341663

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 16602704 doi

S Alvarez, JQ Goodger, EL Marsh, S Chen, VS Asirvatham, DP Schachtman

Donald Danforth Plant Science Center, 975 North Warson Road, Saint Louis, Missouri 63132, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13750.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88554	Sorghum	golgi, vacuole	94.32	93.93
TraesCS7B01G264200.1	Wheat	plasma membrane, vacuole	87.67	88.16
TraesCS7D01G359500.1	Wheat	golgi	87.53	88.15
TraesCS7A01G363600.1	Wheat	plasma membrane, vacuole	86.98	87.47
Os06t0573600-01	Rice	plasma membrane, vacuole	84.9	85.73
HORVU7Hr1G086690.2	Barley	plasma membrane, vacuole	87.12	84.2
GSMUA_Achr7P08970_001	Banana	vacuole	72.85	72.05
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	72.16	70.98
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	72.02	70.65
Zm00001d053585_P002	Maize	plastid	81.02	70.57
CDX88594	Canola	golgi, vacuole	31.72	70.46
GSMUA_Achr7P08940_001	Banana	vacuole	71.19	70.22
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	71.33	69.97
CDX76255	Canola	extracellular	11.91	67.19
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	61.63	66.42
Bra019644.1-P	Field mustard	golgi, plastid, vacuole	65.24	66.15
CDX94367	Canola	mitochondrion	64.54	65.45
Solyc12g008840.1.1	Tomato	extracellular	65.51	65.33
KRH37385	Soybean	nucleus	65.1	65.19
KRH12385	Soybean	vacuole	64.82	64.91
CDX95380	Canola	vacuole	65.24	64.79
CDX76254	Canola	golgi, nucleus, vacuole	52.35	64.29
AT5G56870.1	Thale cress	vacuole	63.99	63.81
Bra013956.1-P	Field mustard	cytosol, mitochondrion, plastid, vacuole	64.4	63.52
CDY11899	Canola	golgi, vacuole	62.88	62.88
CDX89360	Canola	mitochondrion	60.8	62.8
GSMUA_Achr2P16780_001	Banana	plastid	73.13	62.78
Bra006850.1-P	Field mustard	golgi, vacuole	62.6	62.6
CDX92753	Canola	golgi, vacuole	61.5	62.36
CDY42755	Canola	vacuole	61.22	62.08
Bra019120.1-P	Field mustard	golgi, vacuole	61.22	62.08
AT4G26140.7	Thale cress	vacuole	64.13	61.49
CDY32919	Canola	golgi, vacuole	61.08	61.08
Bra035634.1-P	Field mustard	golgi, vacuole	61.08	61.08
CDY20708	Canola	golgi, vacuole	60.94	60.94
Zm00001d044290_P005	Maize	golgi, vacuole	69.11	60.12
AT3G52840.2	Thale cress	golgi, vacuole	63.85	59.03
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	67.87	58.26
Bra027403.1-P	Field mustard	golgi, vacuole	67.59	58.16
CDY23637	Canola	golgi, vacuole	67.45	58.05
CDX97513	Canola	golgi, vacuole	67.45	57.98
CDY51738	Canola	golgi, vacuole	67.17	57.81
CDY37486	Canola	golgi, vacuole	66.76	57.45
KRH10007	Soybean	nucleus	66.76	57.38
KRH44153	Soybean	nucleus	66.9	57.3
KRH47126	Soybean	nucleus	67.04	57.28
KRH23324	Soybean	vacuole	66.48	57.07
PGSC0003DMT400083896	Potato	extracellular	65.93	57.01
AT3G13750.1	Thale cress	golgi, vacuole	66.62	56.79
Solyc12g044880.1.1	Tomato	golgi, vacuole	65.65	56.77
KRH02714	Soybean	golgi, vacuole	65.93	56.73
CDY70594	Canola	cytosol	32.69	56.73
CDY69471	Canola	cytosol	32.69	56.73
Solyc03g121540.2.1	Tomato	nucleus	65.79	56.68
PGSC0003DMT400006654	Potato	golgi, vacuole	65.79	56.68
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	65.65	56.5
Bra021506.1-P	Field mustard	vacuole	67.31	56.45
Solyc06g062580.2.1	Tomato	nucleus	65.37	56.12
PGSC0003DMT400012359	Potato	golgi, vacuole	65.1	55.95
VIT_11s0016g02200.t01	Wine grape	vacuole	64.54	55.74
Zm00001d048440_P003	Maize	vacuole	62.33	51.78
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	63.43	49.89
Zm00001d028474_P002	Maize	vacuole	56.65	45.55
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	27.56	44.52
Zm00001d042654_P005	Maize	endoplasmic reticulum, golgi, vacuole	48.75	40.65
Zm00001d041880_P001	Maize	extracellular, plasma membrane	51.38	40.41
Zm00001d043393_P001	Maize	extracellular	44.04	38.69
Zm00001d010212_P002	Maize	endoplasmic reticulum, extracellular, golgi	42.8	37.68
Zm00001d042656_P001	Maize	golgi, vacuole	35.6	36.61
Zm00001d032022_P003	Maize	golgi, vacuole	41.0	34.82
Zm00001d053225_P005	Maize	golgi, vacuole	40.72	34.75
Zm00001d006243_P005	Maize	endoplasmic reticulum, golgi, vacuole	36.43	30.2
Zm00001d022621_P005	Maize	vacuole	35.73	28.86

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	EntrezGene:100191631
Gene3D:2.60.120.260	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	ProteinID:AQL04122.1	UniProt:B4F9J1	EMBL:BT033779
EMBL:BT067439	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004565	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat
InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	PFAM:PF01301	PRINTS:PR00742
ScanProsite:PS01182	PANTHER:PTHR23421	PANTHER:PTHR23421:SF120	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM
UniParc:UPI00017B6187	EnsemblPlantsGene:Zm00001d046357	EnsemblPlants:Zm00001d046357_P001	EnsemblPlants:Zm00001d046357_T001	SEG:seg	:

Description

Beta-galactosidase

Coordinates

chr9:+:83801694..83806040

Molecular Weight (calculated)

78692.9 Da

IEP (calculated)

8.072

GRAVY (calculated)

-0.214

Length

722 amino acids

Sequence
(BLAST)

001: MSGGAPLLAL LLLAAAAMIA PSPANAAVSY DHRAVVINGQ RRILISGSIH YPRSTPEMWP GLLQKAKDGG LDVVQTYVFW NGHEPVRGQY YFGDRYDLVR
101: FVKLAKQAGL YVHLRIGPYV CAEWNFGGFP VWLKYVPGIS FRTDNGPFKA AMQAFVEKIV SMMKSEGLFE WQGGPIILAQ VENEYGPMES VMGAGAKPYA
201: NWAAKMAVAT GAGVPWVMCK QDDAPDPVIN TCNGFYCDYF SPNSNSKPTM WTEAWTGWFT AFGGAVPHRP VEDMAFAVAR FIQKGGSFVN YYMYHGGTNF
301: DRTSGGPFIA TSYDYDAPID EYGLLRQPKW GHLRDLHKAI KQAEPALVSG DPTIQSLGNY EKAYVFKSSG GACAAFLSNY HTSAAARVVF NGRRYDLPAW
401: SISVLPDCKA AVFNTATVSE PSAPARMSPA GGFSWQSYSE ATNSLDGRAF TKDGLVEQLS MTWDKSDYLW YTTYVNINSN EQFLKSGQWP QLTIYSAGHS
501: LQVFVNGQSY GAVYGGYDSP KLTYSGYVKM WQGSNKISIL SAAVGLPNQG THYETWNVGV LGPVTLSGLN EGKRDLSDQK WTYQIGLHGE SLGVQSVAGS
601: SSVEWGSAAG KQPLTWHKAY FSAPSGDAPV ALDMGSMGKG QAWVNGRHIG RYWSYKASSS GCGGCSYAGT YSETKCQTGC GDVSQRYYHV PRSWLNPSGN
701: LLVMLEEFGG DLSGVKLVTR TA

Best Arabidopsis Sequence Match ( AT3G52840.2 )
(BLAST)

001: MYSDISVSLY IYVHIASRFS FIPITELIIS AEYLLFFIKK QKNIERFGFS KNVKMSMHFR NKAWIILAIL CFSSLIHSTE AVVTYDHKAL IINGQRRILI
101: SGSIHYPRST PEMWPDLIKK AKEGGLDVIQ TYVFWNGHEP SPGNYYFQDR YDLVKFTKLV HQAGLYLDLR IGPYVCAEWN FGGFPVWLKY VPGMVFRTDN
201: EPFKIAMQKF TKKIVDMMKE EKLFETQGGP IILSQIENEY GPMQWEMGAA GKAYSKWTAE MALGLSTGVP WIMCKQEDAP YPIIDTCNGF YCEGFKPNSD
301: NKPKLWTENW TGWFTEFGGA IPNRPVEDIA FSVARFIQNG GSFMNYYMYY GGTNFDRTAG VFIATSYDYD APIDEYGLLR EPKYSHLKEL HKVIKLCEPA
401: LVSVDPTITS LGDKQEIHVF KSKTSCAAFL SNYDTSSAAR VMFRGFPYDL PPWSVSILPD CKTEYYNTAK IRAPTILMKM IPTSTKFSWE SYNEGSPSSN
501: EAGTFVKDGL VEQISMTRDK TDYFWYFTDI TIGSDESFLK TGDNPLLTIF SAGHALHVFV NGLLAGTSYG ALSNSKLTFS QNIKLSVGIN KLALLSTAVG
601: LPNAGVHYET WNTGILGPVT LKGVNSGTWD MSKWKWSYKI GLRGEAMSLH TLAGSSAVKW WIKGFVVKKQ PLTWYKSSFD TPRGNEPLAL DMNTMGKGQV
701: WVNGHNIGRH WPAYTARGNC GRCNYAGIYN EKKCLSHCGE PSQRWYHVPR SWLKPFGNLL VIFEEWGGDP SGISLVKRTA K

Arabidopsis Description

BGAL2Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM56]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.